Analysis of interatomic Contacts of Structural Units in PDB entry:
6D2L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D2L entry

There are 6 chains in PDB entry 6D2L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 148	THR 477
B	GLN 148	THR 477
C	GLN 148	THR 477
D	GLN 148	TYR 476
E	TYR 149	THR 477
F	TYR 149	TYR 476

There are 81 helices in PDB entry 6D2L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	150	154	Right-handed 310
Helix 2	AA2	A	155	164	Right-handed alpha
Helix 3	AA3	A	165	179	Right-handed alpha
Helix 4	AA4	A	180	183	Right-handed 310
Helix 5	AA5	A	196	205	Right-handed alpha
Helix 6	AA6	A	217	229	Right-handed alpha
Helix 7	AA7	A	267	275	Right-handed alpha
Helix 8	AA8	A	299	311	Right-handed alpha
Helix 9	AA9	A	312	314	Right-handed 310
Helix 10	AB1	A	323	325	Right-handed 310
Helix 11	AB2	A	326	336	Right-handed alpha
Helix 12	AB3	A	344	348	Right-handed 310
Helix 13	AB4	A	363	367	Right-handed 310
Helix 14	AB5	B	151	154	Right-handed 310
Helix 15	AB6	B	155	164	Right-handed alpha
Helix 16	AB7	B	165	179	Right-handed alpha
Helix 17	AB8	B	180	183	Right-handed 310
Helix 18	AB9	B	196	205	Right-handed alpha
Helix 19	AC1	B	217	229	Right-handed alpha
Helix 20	AC2	B	267	275	Right-handed alpha
Helix 21	AC3	B	299	311	Right-handed alpha
Helix 22	AC4	B	312	314	Right-handed 310
Helix 23	AC5	B	323	325	Right-handed 310
Helix 24	AC6	B	326	336	Right-handed alpha
Helix 25	AC7	B	344	348	Right-handed 310
Helix 26	AC8	B	363	367	Right-handed 310
Helix 27	AC9	C	149	154	Right-handed alpha
Helix 28	AD1	C	155	164	Right-handed alpha
Helix 29	AD2	C	165	178	Right-handed alpha
Helix 30	AD3	C	179	183	Right-handed 310
Helix 31	AD4	C	196	205	Right-handed alpha
Helix 32	AD5	C	217	229	Right-handed alpha
Helix 33	AD6	C	267	275	Right-handed alpha
Helix 34	AD7	C	299	311	Right-handed alpha
Helix 35	AD8	C	312	314	Right-handed 310
Helix 36	AD9	C	323	325	Right-handed 310
Helix 37	AE1	C	326	336	Right-handed alpha
Helix 38	AE2	C	344	348	Right-handed 310
Helix 39	AE3	C	363	367	Right-handed 310
Helix 40	AE4	D	151	154	Right-handed 310
Helix 41	AE5	D	155	164	Right-handed alpha
Helix 42	AE6	D	165	179	Right-handed alpha
Helix 43	AE7	D	180	183	Right-handed 310
Helix 44	AE8	D	196	205	Right-handed alpha
Helix 45	AE9	D	217	229	Right-handed alpha
Helix 46	AF1	D	264	266	Right-handed 310
Helix 47	AF2	D	267	275	Right-handed alpha
Helix 48	AF3	D	299	309	Right-handed alpha
Helix 49	AF4	D	310	315	Right-handed 310
Helix 50	AF5	D	323	325	Right-handed 310
Helix 51	AF6	D	326	336	Right-handed alpha
Helix 52	AF7	D	344	348	Right-handed 310
Helix 53	AF8	D	363	367	Right-handed 310
Helix 54	AF9	E	150	154	Right-handed alpha
Helix 55	AG1	E	155	164	Right-handed alpha
Helix 56	AG2	E	165	178	Right-handed alpha
Helix 57	AG3	E	179	183	Right-handed 310
Helix 58	AG4	E	196	205	Right-handed alpha
Helix 59	AG5	E	217	229	Right-handed alpha
Helix 60	AG6	E	264	266	Right-handed 310
Helix 61	AG7	E	267	275	Right-handed alpha
Helix 62	AG8	E	299	311	Right-handed alpha
Helix 63	AG9	E	312	314	Right-handed 310
Helix 64	AH1	E	323	325	Right-handed 310
Helix 65	AH2	E	326	336	Right-handed alpha
Helix 66	AH3	E	344	348	Right-handed 310
Helix 67	AH4	E	363	367	Right-handed 310
Helix 68	AH5	F	149	154	Right-handed 310
Helix 69	AH6	F	155	164	Right-handed alpha
Helix 70	AH7	F	165	179	Right-handed alpha
Helix 71	AH8	F	180	183	Right-handed 310
Helix 72	AH9	F	196	205	Right-handed alpha
Helix 73	AI1	F	217	229	Right-handed alpha
Helix 74	AI2	F	241	245	Right-handed 310
Helix 75	AI3	F	267	275	Right-handed alpha
Helix 76	AI4	F	299	309	Right-handed alpha
Helix 77	AI5	F	310	315	Right-handed 310
Helix 78	AI6	F	323	325	Right-handed 310
Helix 79	AI7	F	326	336	Right-handed alpha
Helix 80	AI8	F	344	348	Right-handed 310
Helix 81	AI9	F	363	367	Right-handed 310

There are 24 sheets in PDB entry 6D2L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	239	first strand
Strand 2	A	209	214	parallel
Strand 3	A	187	191	parallel
Strand 4	A	251	256	parallel
Strand 5	A	279	286	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	358	first strand
Strand 2	A	289	297	anti-parallel
Strand 3	A	382	396	anti-parallel
Strand 4	A	401	405	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	358	first strand
Strand 2	A	289	297	anti-parallel
Strand 3	A	382	396	anti-parallel
Strand 4	A	417	428	anti-parallel
Strand 5	A	339	341	anti-parallel
Strand 6	A	473	474	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	377	first strand
Strand 2	A	433	442	anti-parallel
Strand 3	A	448	456	anti-parallel
Strand 4	A	462	468	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	239	first strand
Strand 2	B	209	214	parallel
Strand 3	B	187	191	parallel
Strand 4	B	251	256	parallel
Strand 5	B	279	286	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	358	first strand
Strand 2	B	289	297	anti-parallel
Strand 3	B	382	396	anti-parallel
Strand 4	B	401	405	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	358	first strand
Strand 2	B	289	297	anti-parallel
Strand 3	B	382	396	anti-parallel
Strand 4	B	417	428	anti-parallel
Strand 5	B	339	341	anti-parallel
Strand 6	B	473	474	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	377	first strand
Strand 2	B	433	443	anti-parallel
Strand 3	B	447	456	anti-parallel
Strand 4	B	462	468	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	239	first strand
Strand 2	C	209	214	parallel
Strand 3	C	187	191	parallel
Strand 4	C	251	256	parallel
Strand 5	C	279	286	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	358	first strand
Strand 2	C	289	297	anti-parallel
Strand 3	C	382	396	anti-parallel
Strand 4	C	401	405	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	358	first strand
Strand 2	C	289	297	anti-parallel
Strand 3	C	382	396	anti-parallel
Strand 4	C	417	428	anti-parallel
Strand 5	C	339	341	anti-parallel
Strand 6	C	473	474	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	369	377	first strand
Strand 2	C	433	443	anti-parallel
Strand 3	C	447	456	anti-parallel
Strand 4	C	462	468	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	239	first strand
Strand 2	D	209	214	parallel
Strand 3	D	187	191	parallel
Strand 4	D	251	256	parallel
Strand 5	D	279	286	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	358	first strand
Strand 2	D	289	297	anti-parallel
Strand 3	D	382	396	anti-parallel
Strand 4	D	401	405	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	358	first strand
Strand 2	D	289	297	anti-parallel
Strand 3	D	382	396	anti-parallel
Strand 4	D	417	428	anti-parallel
Strand 5	D	339	341	anti-parallel
Strand 6	D	473	474	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	369	377	first strand
Strand 2	D	433	442	anti-parallel
Strand 3	D	448	456	anti-parallel
Strand 4	D	462	468	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	239	first strand
Strand 2	E	209	214	parallel
Strand 3	E	187	191	parallel
Strand 4	E	251	256	parallel
Strand 5	E	279	286	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	353	358	first strand
Strand 2	E	289	297	anti-parallel
Strand 3	E	382	396	anti-parallel
Strand 4	E	401	405	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	353	358	first strand
Strand 2	E	289	297	anti-parallel
Strand 3	E	382	396	anti-parallel
Strand 4	E	417	428	anti-parallel
Strand 5	E	339	341	anti-parallel
Strand 6	E	473	474	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	369	377	first strand
Strand 2	E	433	443	anti-parallel
Strand 3	E	447	456	anti-parallel
Strand 4	E	462	468	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	235	239	first strand
Strand 2	F	209	214	parallel
Strand 3	F	187	191	parallel
Strand 4	F	251	256	parallel
Strand 5	F	279	286	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	353	358	first strand
Strand 2	F	289	297	anti-parallel
Strand 3	F	382	396	anti-parallel
Strand 4	F	401	405	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	353	358	first strand
Strand 2	F	289	297	anti-parallel
Strand 3	F	382	396	anti-parallel
Strand 4	F	417	428	anti-parallel
Strand 5	F	339	341	anti-parallel
Strand 6	F	473	474	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	369	377	first strand
Strand 2	F	433	443	anti-parallel
Strand 3	F	447	456	anti-parallel
Strand 4	F	462	468	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D2L

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D2L