Analysis of interatomic Contacts of Structural Units in PDB entry:
6D2V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D2V entry

There are 2 chains in PDB entry 6D2V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -7SER 307
B
 MET 1PRO 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6D2V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-4 1Right-handed 310
Helix 2
AA2
A
15 25Right-handed alpha
Helix 3
AA3
A
39 47Right-handed alpha
Helix 4
AA4
A
60 65Right-handed 310
Helix 5
AA5
A
86 105Right-handed alpha
Helix 6
AA6
A
118 120Right-handed 310
Helix 7
AA7
A
143 164Right-handed alpha
Helix 8
AA8
A
183 195Right-handed alpha
Helix 9
AA9
A
213 226Right-handed alpha
Helix 10
AB1
A
244 256Right-handed alpha
Helix 11
AB2
A
275 283Right-handed alpha
Helix 12
AB3
A
288 301Right-handed alpha
Helix 13
AB4
A
302 305Right-handed 310
Helix 14
AB5
B
15 24Right-handed alpha
Helix 15
AB6
B
39 46Right-handed alpha
Helix 16
AB7
B
60 65Right-handed 310
Helix 17
AB8
B
86 105Right-handed alpha
Helix 18
AB9
B
118 120Right-handed 310
Helix 19
AC1
B
143 164Right-handed alpha
Helix 20
AC2
B
183 195Right-handed alpha
Helix 21
AC3
B
213 226Right-handed alpha
Helix 22
AC4
B
244 256Right-handed alpha
Helix 23
AC5
B
275 283Right-handed alpha
Helix 24
AC6
B
288 301Right-handed alpha
Helix 25
AC7
B
302 305Right-handed 310
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There are 10 sheets in PDB entry 6D2V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
28 33parallel
Strand 3
A
5 9parallel
Strand 4
A
73 76parallel
Strand 5
A
110 116parallel
Strand 6
A
167 172parallel
Strand 7
A
232 236parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
272 273parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
211 212parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
261 264parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
242 243anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
28 33parallel
Strand 3
B
5 9parallel
Strand 4
B
73 76parallel
Strand 5
B
110 116parallel
Strand 6
B
167 172parallel
Strand 7
B
232 236parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 129first strand
Strand 2
B
272 273parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 176first strand
Strand 2
B
211 212parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 201first strand
Strand 2
B
260 264parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
242 243anti-parallel
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