Analysis of interatomic Contacts of Structural Units in PDB entry:
6D2W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D2W entry

There are 2 chains in PDB entry 6D2W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 90ASN 776
B
 GLY 92PRO 665
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 6D2W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
101 115Right-handed alpha
Helix 2
AA2
A
131 142Right-handed alpha
Helix 3
AA3
A
171 180Right-handed alpha
Helix 4
AA4
A
217 222Right-handed alpha
Helix 5
AA5
A
226 249Right-handed alpha
Helix 6
AA6
A
278 282Right-handed 310
Helix 7
AA7
A
284 302Right-handed alpha
Helix 8
AA8
A
326 330Right-handed 310
Helix 9
AA9
A
332 336Right-handed 310
Helix 10
AB1
A
347 362Right-handed alpha
Helix 11
AB2
A
382 390Right-handed alpha
Helix 12
AB3
A
400 404Right-handed 310
Helix 13
AB4
A
406 415Right-handed alpha
Helix 14
AB5
A
421 425Right-handed 310
Helix 15
AB6
A
435 444Right-handed alpha
Helix 16
AB7
A
463 469Right-handed alpha
Helix 17
AB8
A
477 487Right-handed alpha
Helix 18
AB9
A
498 502Right-handed 310
Helix 19
AC1
A
509 527Right-handed alpha
Helix 20
AC2
A
549 571Right-handed alpha
Helix 21
AC3
A
599 619Right-handed alpha
Helix 22
AC4
A
620 625Right-handed 310
Helix 23
AC5
A
633 636Right-handed 310
Helix 24
AC6
A
638 644Right-handed alpha
Helix 25
AC7
A
667 672Right-handed alpha
Helix 26
AC8
A
676 694Right-handed alpha
Helix 27
AC9
A
708 712Right-handed 310
Helix 28
AD1
A
719 740Right-handed alpha
Helix 29
AD2
A
752 758Right-handed 310
Helix 30
AD3
A
763 776Right-handed alpha
Helix 31
AD4
B
101 115Right-handed alpha
Helix 32
AD5
B
131 142Right-handed alpha
Helix 33
AD6
B
171 180Right-handed alpha
Helix 34
AD7
B
219 223Right-handed 310
Helix 35
AD8
B
226 249Right-handed alpha
Helix 36
AD9
B
278 282Right-handed 310
Helix 37
AE1
B
284 302Right-handed alpha
Helix 38
AE2
B
326 330Right-handed 310
Helix 39
AE3
B
347 362Right-handed alpha
Helix 40
AE4
B
382 389Right-handed alpha
Helix 41
AE5
B
400 404Right-handed 310
Helix 42
AE6
B
406 415Right-handed alpha
Helix 43
AE7
B
421 425Right-handed 310
Helix 44
AE8
B
435 444Right-handed alpha
Helix 45
AE9
B
463 469Right-handed alpha
Helix 46
AF1
B
477 487Right-handed alpha
Helix 47
AF2
B
498 502Right-handed 310
Helix 48
AF3
B
509 527Right-handed alpha
Helix 49
AF4
B
549 571Right-handed alpha
Helix 50
AF5
B
599 619Right-handed alpha
Helix 51
AF6
B
620 625Right-handed 310
Helix 52
AF7
B
633 636Right-handed 310
Helix 53
AF8
B
638 644Right-handed alpha
Helix 54
AF9
B
667 672Right-handed alpha
Helix 55
AG1
B
676 694Right-handed alpha
Helix 56
AG2
B
708 712Right-handed 310
Helix 57
AG3
B
719 740Right-handed alpha
Helix 58
AG4
B
753 758Right-handed alpha
Helix 59
AG5
B
763 775Right-handed alpha
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There are 8 sheets in PDB entry 6D2W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
419 420parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
147 151parallel
Strand 3
A
183 188parallel
Strand 4
A
253 257parallel
Strand 5
A
307 312parallel
Strand 6
A
338 344parallel
Strand 7
A
366 373parallel
Strand 8
A
396 398parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
207 208anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 448first strand
Strand 2
A
489 494parallel
Strand 3
A
529 533parallel
Strand 4
A
578 581parallel
Strand 5
A
628 631parallel
Strand 6
A
656 662parallel
Strand 7
A
699 704parallel
Strand 8
A
744 747parallel
Strand 9
A
445 448parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 120first strand
Strand 2
B
419 420parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 124first strand
Strand 2
B
147 151parallel
Strand 3
B
183 188parallel
Strand 4
B
253 257parallel
Strand 5
B
307 313parallel
Strand 6
B
338 344parallel
Strand 7
B
366 373parallel
Strand 8
B
396 398parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 193first strand
Strand 2
B
207 208anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
445 448first strand
Strand 2
B
489 494parallel
Strand 3
B
529 533parallel
Strand 4
B
578 581parallel
Strand 5
B
628 631parallel
Strand 6
B
656 662parallel
Strand 7
B
699 704parallel
Strand 8
B
744 747parallel
Strand 9
B
445 448parallel
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