Analysis of interatomic Contacts of Structural Units in PDB entry:
6D2Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D2Y entry

There is 1 chain in PDB entry 6D2Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 33LYS 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6D2Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 72Right-handed 310
Helix 2
AA2
A
87 91Right-handed 310
Helix 3
AA3
A
175 177Right-handed 310
Helix 4
AA4
A
275 277Right-handed 310
Helix 5
AA5
A
298 303Right-handed alpha
Helix 6
AA6
A
307 309Right-handed 310
Helix 7
AA7
A
361 365Right-handed 310
Helix 8
AA8
A
400 402Right-handed 310
Helix 9
AA9
A
417 422Right-handed 310
Helix 10
AB1
A
432 436Right-handed 310
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There are 8 sheets in PDB entry 6D2Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 45first strand
Strand 2
A
63 69anti-parallel
Strand 3
A
95 99anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
127 129parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
74 79anti-parallel
Strand 3
A
111 116anti-parallel
Strand 4
A
121 125anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 138first strand
Strand 2
A
148 154anti-parallel
Strand 3
A
186 190anti-parallel
Strand 4
A
179 182anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
165 168anti-parallel
Strand 3
A
200 205anti-parallel
Strand 4
A
208 215anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 224first strand
Strand 2
A
449 458anti-parallel
Strand 3
A
258 261anti-parallel
Strand 4
A
246 248anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 224first strand
Strand 2
A
449 458anti-parallel
Strand 3
A
311 318anti-parallel
Strand 4
A
393 398anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 282first strand
Strand 2
A
423 428anti-parallel
Strand 3
A
330 335anti-parallel
Strand 4
A
372 374anti-parallel
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