Analysis of interatomic Contacts of Structural Units in PDB entry:
6D34


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D34 entry

There are 2 chains in PDB entry 6D34 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 55SER 186
B
 ALA 56SER 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6D34. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 72Right-handed alpha
Helix 2
AA2
A
74 80Right-handed alpha
Helix 3
AA3
A
91 98Right-handed 310
Helix 4
AA4
A
105 116Right-handed alpha
Helix 5
AA5
A
176 185Right-handed alpha
Helix 6
AA6
B
57 73Right-handed alpha
Helix 7
AA7
B
74 80Right-handed alpha
Helix 8
AA8
B
91 98Right-handed 310
Helix 9
AA9
B
105 116Right-handed alpha
Helix 10
AB1
B
117 119Right-handed 310
Helix 11
AB2
B
176 185Right-handed alpha
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There are 2 sheets in PDB entry 6D34. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 104first strand
Strand 2
A
82 90anti-parallel
Strand 3
A
167 174parallel
Strand 4
A
152 164anti-parallel
Strand 5
A
136 147anti-parallel
Strand 6
A
120 133anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 104first strand
Strand 2
B
82 90anti-parallel
Strand 3
B
167 174parallel
Strand 4
B
152 164anti-parallel
Strand 5
B
136 146anti-parallel
Strand 6
B
122 133anti-parallel
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