Analysis of interatomic Contacts of Structural Units in PDB entry:
6D3F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D3F entry

There are 2 chains in PDB entry 6D3F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 425PHE 699
B
 GLY 425ILE 692
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6D3F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
425 435Right-handed alpha
Helix 2
AA2
A
439 442Right-handed 310
Helix 3
AA3
A
443 448Right-handed alpha
Helix 4
AA4
A
448 453Right-handed alpha
Helix 5
AA5
A
503 505Right-handed 310
Helix 6
AA6
A
506 517Right-handed alpha
Helix 7
AA7
A
579 582Right-handed 310
Helix 8
AA8
A
604 622Right-handed alpha
Helix 9
AA9
A
634 654Right-handed alpha
Helix 10
AB1
A
657 667Right-handed alpha
Helix 11
AB2
A
675 693Right-handed alpha
Helix 12
AB3
A
694 697Right-handed 310
Helix 13
AB4
B
426 435Right-handed alpha
Helix 14
AB5
B
439 442Right-handed 310
Helix 15
AB6
B
443 448Right-handed alpha
Helix 16
AB7
B
448 453Right-handed alpha
Helix 17
AB8
B
503 505Right-handed 310
Helix 18
AB9
B
506 517Right-handed alpha
Helix 19
AC1
B
576 580Right-handed 310
Helix 20
AC2
B
604 622Right-handed alpha
Helix 21
AC3
B
634 654Right-handed alpha
Helix 22
AC4
B
657 669Right-handed alpha
Helix 23
AC5
B
675 691Right-handed alpha
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There are 4 sheets in PDB entry 6D3F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 469first strand
Strand 2
A
481 487anti-parallel
Strand 3
A
496 499anti-parallel
Strand 4
A
626 629parallel
Strand 5
A
521 524parallel
Strand 6
A
584 592parallel
Strand 7
A
564 573anti-parallel
Strand 8
A
551 561anti-parallel
Strand 9
A
545 548anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 530first strand
Strand 2
A
533 534anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
484 487first strand
Strand 2
B
496 499anti-parallel
Strand 3
B
626 629parallel
Strand 4
B
521 524parallel
Strand 5
B
584 592parallel
Strand 6
B
564 573anti-parallel
Strand 7
B
551 560anti-parallel
Strand 8
B
545 548anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
529 530first strand
Strand 2
B
533 534anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il