Analysis of interatomic Contacts of Structural Units in PDB entry:
6D3H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D3H entry

There are 4 chains in PDB entry 6D3H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 10	ARG 295
B	ASN 10	ARG 295
I	ASN 10	ARG 295
M	THR 9	ARG 295

There are 36 helices in PDB entry 6D3H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	53	Right-handed alpha
Helix 2	AA2	A	63	73	Right-handed alpha
Helix 3	AA3	A	143	149	Right-handed alpha
Helix 4	AA4	A	151	159	Right-handed alpha
Helix 5	AA5	A	167	172	Right-handed alpha
Helix 6	AA6	A	172	178	Right-handed alpha
Helix 7	AA7	A	191	197	Right-handed alpha
Helix 8	AA8	A	229	245	Right-handed alpha
Helix 9	AA9	A	246	248	Right-handed 310
Helix 10	AB1	B	38	53	Right-handed alpha
Helix 11	AB2	B	63	75	Right-handed alpha
Helix 12	AB3	B	143	149	Right-handed alpha
Helix 13	AB4	B	151	159	Right-handed alpha
Helix 14	AB5	B	167	172	Right-handed alpha
Helix 15	AB6	B	172	178	Right-handed alpha
Helix 16	AB7	B	191	197	Right-handed alpha
Helix 17	AB8	B	229	245	Right-handed alpha
Helix 18	AB9	B	246	248	Right-handed 310
Helix 19	AC1	I	38	53	Right-handed alpha
Helix 20	AC2	I	63	73	Right-handed alpha
Helix 21	AC3	I	143	149	Right-handed alpha
Helix 22	AC4	I	151	159	Right-handed alpha
Helix 23	AC5	I	167	172	Right-handed alpha
Helix 24	AC6	I	172	178	Right-handed alpha
Helix 25	AC7	I	191	197	Right-handed alpha
Helix 26	AC8	I	229	245	Right-handed alpha
Helix 27	AC9	I	246	248	Right-handed 310
Helix 28	AD1	M	38	53	Right-handed alpha
Helix 29	AD2	M	63	73	Right-handed alpha
Helix 30	AD3	M	143	149	Right-handed alpha
Helix 31	AD4	M	151	159	Right-handed alpha
Helix 32	AD5	M	167	172	Right-handed alpha
Helix 33	AD6	M	172	178	Right-handed alpha
Helix 34	AD7	M	191	197	Right-handed alpha
Helix 35	AD8	M	229	245	Right-handed alpha
Helix 36	AD9	M	246	248	Right-handed 310

There are 16 sheets in PDB entry 6D3H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	19	first strand
Strand 2	A	26	29	anti-parallel
Strand 3	A	54	57	parallel
Strand 4	A	260	264	anti-parallel
Strand 5	A	123	130	anti-parallel
Strand 6	A	281	288	anti-parallel
Strand 7	A	89	97	anti-parallel
Strand 8	A	85	86	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	253	first strand
Strand 2	A	138	142	anti-parallel
Strand 3	A	268	272	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	202	first strand
Strand 2	A	162	165	anti-parallel
Strand 3	A	222	225	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	206	first strand
Strand 2	A	213	215	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	26	29	anti-parallel
Strand 3	B	54	57	parallel
Strand 4	B	260	264	anti-parallel
Strand 5	B	123	130	anti-parallel
Strand 6	B	281	288	anti-parallel
Strand 7	B	89	97	anti-parallel
Strand 8	B	85	86	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	253	first strand
Strand 2	B	138	142	anti-parallel
Strand 3	B	268	272	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	202	first strand
Strand 2	B	162	165	anti-parallel
Strand 3	B	222	225	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	206	first strand
Strand 2	B	213	215	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	16	19	first strand
Strand 2	I	26	29	anti-parallel
Strand 3	I	54	57	parallel
Strand 4	I	260	264	anti-parallel
Strand 5	I	123	130	anti-parallel
Strand 6	I	281	288	anti-parallel
Strand 7	I	89	97	anti-parallel
Strand 8	I	85	86	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	250	253	first strand
Strand 2	I	138	142	anti-parallel
Strand 3	I	268	272	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	199	202	first strand
Strand 2	I	162	165	anti-parallel
Strand 3	I	222	225	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	204	206	first strand
Strand 2	I	213	215	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	16	19	first strand
Strand 2	M	26	29	anti-parallel
Strand 3	M	54	57	parallel
Strand 4	M	260	264	anti-parallel
Strand 5	M	123	130	anti-parallel
Strand 6	M	281	288	anti-parallel
Strand 7	M	89	97	anti-parallel
Strand 8	M	85	86	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	250	253	first strand
Strand 2	M	138	142	anti-parallel
Strand 3	M	268	272	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	199	202	first strand
Strand 2	M	162	165	anti-parallel
Strand 3	M	222	225	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	204	206	first strand
Strand 2	M	213	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D3H

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D3H