Analysis of interatomic Contacts of Structural Units in PDB entry:
6D3J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D3J entry

There is 1 chain in PDB entry 6D3J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 10ARG 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6D3J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 53Right-handed alpha
Helix 2
AA2
A
63 73Right-handed alpha
Helix 3
AA3
A
143 149Right-handed alpha
Helix 4
AA4
A
151 159Right-handed alpha
Helix 5
AA5
A
229 245Right-handed alpha
Helix 6
AA6
A
246 248Right-handed 310
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There are 5 sheets in PDB entry 6D3J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 19first strand
Strand 2
A
26 29anti-parallel
Strand 3
A
54 57parallel
Strand 4
A
260 264anti-parallel
Strand 5
A
123 130anti-parallel
Strand 6
A
282 288anti-parallel
Strand 7
A
77 78anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 19first strand
Strand 2
A
26 29anti-parallel
Strand 3
A
54 57parallel
Strand 4
A
260 264anti-parallel
Strand 5
A
123 130anti-parallel
Strand 6
A
282 288anti-parallel
Strand 7
A
92 95anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 253first strand
Strand 2
A
138 142anti-parallel
Strand 3
A
268 272anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 202first strand
Strand 2
A
162 165anti-parallel
Strand 3
A
222 225anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 206first strand
Strand 2
A
213 215anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il