Analysis of interatomic Contacts of Structural Units in PDB entry:
6D3K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D3K entry

There are 3 chains in PDB entry 6D3K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 255LYS 541
A
 LYS 256GLU 544
C
 TYR 257LYS 541
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6D3K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
260 266Right-handed alpha
Helix 2
AA2
B
303 315Right-handed alpha
Helix 3
AA3
B
373 381Right-handed alpha
Helix 4
AA4
B
387 408Right-handed alpha
Helix 5
AA5
B
416 418Right-handed 310
Helix 6
AA6
B
456 461Right-handed alpha
Helix 7
AA7
B
467 482Right-handed alpha
Helix 8
AA8
B
487 500Right-handed alpha
Helix 9
AA9
B
508 520Right-handed alpha
Helix 10
AB1
B
522 526Right-handed 310
Helix 11
AB2
B
528 541Right-handed alpha
Helix 12
AB3
A
260 266Right-handed alpha
Helix 13
AB4
A
302 315Right-handed alpha
Helix 14
AB5
A
373 381Right-handed alpha
Helix 15
AB6
A
387 408Right-handed alpha
Helix 16
AB7
A
416 418Right-handed 310
Helix 17
AB8
A
456 463Right-handed alpha
Helix 18
AB9
A
467 483Right-handed alpha
Helix 19
AC1
A
487 500Right-handed alpha
Helix 20
AC2
A
508 520Right-handed alpha
Helix 21
AC3
A
522 526Right-handed 310
Helix 22
AC4
A
528 540Right-handed alpha
Helix 23
AC5
C
260 266Right-handed alpha
Helix 24
AC6
C
302 305Right-handed 310
Helix 25
AC7
C
306 315Right-handed alpha
Helix 26
AC8
C
373 380Right-handed alpha
Helix 27
AC9
C
387 408Right-handed alpha
Helix 28
AD1
C
432 436Right-handed 310
Helix 29
AD2
C
456 461Right-handed alpha
Helix 30
AD3
C
467 483Right-handed alpha
Helix 31
AD4
C
487 499Right-handed alpha
Helix 32
AD5
C
508 519Right-handed alpha
Helix 33
AD6
C
522 526Right-handed 310
Helix 34
AD7
C
528 541Right-handed alpha
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There are 8 sheets in PDB entry 6D3K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 274first strand
Strand 2
B
279 286anti-parallel
Strand 3
B
292 299anti-parallel
Strand 4
B
358 367anti-parallel
Strand 5
B
323 332anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
420 422first strand
Strand 2
B
428 430anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 274first strand
Strand 2
A
279 286anti-parallel
Strand 3
A
292 299anti-parallel
Strand 4
A
359 367anti-parallel
Strand 5
A
323 331anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 422first strand
Strand 2
A
428 430anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
267 268first strand
Strand 2
C
281 286anti-parallel
Strand 3
C
272 274anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
267 268first strand
Strand 2
C
281 286anti-parallel
Strand 3
C
292 299anti-parallel
Strand 4
C
359 367anti-parallel
Strand 5
C
323 331anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
410 411first strand
Strand 2
C
437 438anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
420 422first strand
Strand 2
C
428 430anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il