Analysis of interatomic Contacts of Structural Units in PDB entry:
6D3L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D3L entry

There is 1 chain in PDB entry 6D3L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 258LYS 541
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6D3L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
260 266Right-handed alpha
Helix 2
AA2
A
305 313Right-handed alpha
Helix 3
AA3
A
373 380Right-handed alpha
Helix 4
AA4
A
389 408Right-handed alpha
Helix 5
AA5
A
432 434Right-handed 310
Helix 6
AA6
A
469 482Right-handed alpha
Helix 7
AA7
A
488 501Right-handed alpha
Helix 8
AA8
A
508 519Right-handed alpha
Helix 9
AA9
A
528 539Right-handed alpha
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There are 4 sheets in PDB entry 6D3L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 275first strand
Strand 2
A
279 286anti-parallel
Strand 3
A
291 299anti-parallel
Strand 4
A
365 367anti-parallel
Strand 5
A
323 325anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 275first strand
Strand 2
A
279 286anti-parallel
Strand 3
A
291 299anti-parallel
Strand 4
A
358 362anti-parallel
Strand 5
A
328 332anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 412first strand
Strand 2
A
436 438anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 422first strand
Strand 2
A
428 430anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il