Analysis of interatomic Contacts of Structural Units in PDB entry:
6D3R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D3R entry

There is 1 chain in PDB entry 6D3R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 42GLN 1441
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 6D3R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 63Right-handed alpha
Helix 2
AA2
A
69 94Right-handed alpha
Helix 3
AA3
A
95 97Right-handed 310
Helix 4
AA4
A
98 109Right-handed alpha
Helix 5
AA5
A
117 166Right-handed alpha
Helix 6
AA6
A
171 175Right-handed 310
Helix 7
AA7
A
177 187Right-handed alpha
Helix 8
AA8
A
191 196Right-handed alpha
Helix 9
AA9
A
197 199Right-handed 310
Helix 10
AB1
A
200 215Right-handed alpha
Helix 11
AB2
A
222 268Right-handed alpha
Helix 12
AB3
A
269 277Right-handed alpha
Helix 13
AB4
A
279 322Right-handed alpha
Helix 14
AB5
A
323 328Right-handed alpha
Helix 15
AB6
A
333 353Right-handed alpha
Helix 16
AB7
A
353 377Right-handed alpha
Helix 17
AB8
A
466 473Right-handed alpha
Helix 18
AB9
A
503 508Right-handed alpha
Helix 19
AC1
A
514 525Right-handed alpha
Helix 20
AC2
A
527 532Right-handed alpha
Helix 21
AC3
A
536 539Right-handed 310
Helix 22
AC4
A
550 565Right-handed alpha
Helix 23
AC5
A
580 592Right-handed alpha
Helix 24
AC6
A
607 614Right-handed alpha
Helix 25
AC7
A
630 638Right-handed alpha
Helix 26
AC8
A
638 648Right-handed alpha
Helix 27
AC9
A
650 654Right-handed 310
Helix 28
AD1
A
655 670Right-handed alpha
Helix 29
AD2
A
851 860Right-handed alpha
Helix 30
AD3
A
860 884Right-handed alpha
Helix 31
AD4
A
885 888Right-handed 310
Helix 32
AD5
A
918 938Right-handed alpha
Helix 33
AD6
A
939 962Right-handed alpha
Helix 34
AD7
A
966 971Right-handed 310
Helix 35
AD8
A
973 1016Right-handed alpha
Helix 36
AD9
A
1016 1045Right-handed alpha
Helix 37
AE1
A
1045 1065Right-handed alpha
Helix 38
AE2
A
1065 1072Right-handed alpha
Helix 39
AE3
A
1074 1125Right-handed alpha
Helix 40
AE4
A
1130 1142Right-handed alpha
Helix 41
AE5
A
1143 1169Right-handed alpha
Helix 42
AE6
A
1251 1260Right-handed alpha
Helix 43
AE7
A
1277 1279Right-handed 310
Helix 44
AE8
A
1280 1287Right-handed alpha
Helix 45
AE9
A
1302 1307Right-handed alpha
Helix 46
AF1
A
1313 1324Right-handed alpha
Helix 47
AF2
A
1326 1333Right-handed alpha
Helix 48
AF3
A
1335 1338Right-handed 310
Helix 49
AF4
A
1349 1364Right-handed alpha
Helix 50
AF5
A
1374 1377Right-handed 310
Helix 51
AF6
A
1379 1394Right-handed alpha
Helix 52
AF7
A
1405 1410Right-handed alpha
Helix 53
AF8
A
1428 1439Right-handed alpha
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There are 6 sheets in PDB entry 6D3R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 449first strand
Strand 2
A
393 400anti-parallel
Strand 3
A
480 485anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 492first strand
Strand 2
A
569 572parallel
Strand 3
A
600 604parallel
Strand 4
A
454 459parallel
Strand 5
A
616 621parallel
Strand 6
A
624 629anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 502first strand
Strand 2
A
541 542anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1227 1236first strand
Strand 2
A
1212 1220anti-parallel
Strand 3
A
1264 1271anti-parallel
Strand 4
A
1274 1275anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1288 1291first strand
Strand 2
A
1368 1372parallel
Strand 3
A
1398 1402parallel
Strand 4
A
1242 1246parallel
Strand 5
A
1414 1419parallel
Strand 6
A
1422 1426anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1300 1301first strand
Strand 2
A
1340 1341anti-parallel
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