Analysis of interatomic Contacts of Structural Units in PDB entry:
6D3W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D3W entry

There are 2 chains in PDB entry 6D3W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1MET 249
B
 GLY -1MET 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6D3W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 23Right-handed 310
Helix 2
AA2
A
45 59Right-handed alpha
Helix 3
AA3
A
68 74Right-handed alpha
Helix 4
AA4
A
86 89Right-handed 310
Helix 5
AA5
A
99 111Right-handed alpha
Helix 6
AA6
A
112 114Right-handed 310
Helix 7
AA7
A
115 131Right-handed alpha
Helix 8
AA8
A
158 171Right-handed alpha
Helix 9
AA9
A
194 211Right-handed alpha
Helix 10
AB1
A
221 223Right-handed 310
Helix 11
AB2
A
224 229Right-handed alpha
Helix 12
AB3
A
240 249Right-handed alpha
Helix 13
AB4
B
19 23Right-handed 310
Helix 14
AB5
B
45 59Right-handed alpha
Helix 15
AB6
B
68 74Right-handed alpha
Helix 16
AB7
B
86 89Right-handed 310
Helix 17
AB8
B
99 111Right-handed alpha
Helix 18
AB9
B
112 114Right-handed 310
Helix 19
AC1
B
115 131Right-handed alpha
Helix 20
AC2
B
158 171Right-handed alpha
Helix 21
AC3
B
194 211Right-handed alpha
Helix 22
AC4
B
221 223Right-handed 310
Helix 23
AC5
B
224 229Right-handed alpha
Helix 24
AC6
B
240 249Right-handed alpha
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There are 7 sheets in PDB entry 6D3W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
7 10parallel
Strand 3
A
215 218parallel
Strand 4
A
233 237parallel
Strand 5
B
233 237anti-parallel
Strand 6
B
215 218parallel
Strand 7
B
7 10parallel
Strand 8
B
60 63parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
40 44anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 85first strand
Strand 2
A
90 92anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 141first strand
Strand 2
A
146 153anti-parallel
Strand 3
A
186 190anti-parallel
Strand 4
A
177 181anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 34first strand
Strand 2
B
40 44anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 85first strand
Strand 2
B
90 92anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 141first strand
Strand 2
B
146 153anti-parallel
Strand 3
B
186 190anti-parallel
Strand 4
B
177 181anti-parallel
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