Analysis of interatomic Contacts of Structural Units in PDB entry:
6D47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D47 entry

There is 1 chain in PDB entry 6D47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 10GLY 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 6D47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 32Right-handed alpha
Helix 2
AA2
A
39 42Right-handed 310
Helix 3
AA3
A
83 93Right-handed alpha
Helix 4
AA4
A
122 126Right-handed 310
Helix 5
AA5
A
141 153Right-handed alpha
Helix 6
AA6
A
161 164Right-handed 310
Helix 7
AA7
A
208 217Right-handed alpha
Helix 8
AA8
A
230 234Right-handed 310
Helix 9
AA9
A
260 265Right-handed 310
Helix 10
AB1
A
277 288Right-handed alpha
Helix 11
AB2
A
289 291Right-handed 310
Helix 12
AB3
A
336 346Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 6D47. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 75first strand
Strand 2
A
14 17anti-parallel
Strand 3
A
98 103anti-parallel
Strand 4
A
106 111anti-parallel
Strand 5
A
114 119anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 82first strand
Strand 2
A
44 50anti-parallel
Strand 3
A
53 59anti-parallel
Strand 4
A
63 70anti-parallel
Strand 5
A
247 252anti-parallel
Strand 6
A
239 244anti-parallel
Strand 7
A
223 227anti-parallel
Strand 8
A
137 140anti-parallel
Strand 9
A
194 195anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 207first strand
Strand 2
A
166 172anti-parallel
Strand 3
A
175 181anti-parallel
Strand 4
A
185 192anti-parallel
Strand 5
A
391 395anti-parallel
Strand 6
A
363 368anti-parallel
Strand 7
A
351 356anti-parallel
Strand 8
A
271 276anti-parallel
Strand 9
A
325 328anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
384 385anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 323first strand
Strand 2
A
305 312anti-parallel
Strand 3
A
297 302anti-parallel
Strand 4
A
331 335anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il