Analysis of interatomic Contacts of Structural Units in PDB entry:
6D4B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D4B entry

There are 2 chains in PDB entry 6D4B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 361
B
 MET 1HIS 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 6D4B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 17Right-handed 310
Helix 2
AA2
A
26 29Right-handed 310
Helix 3
AA3
A
30 37Right-handed alpha
Helix 4
AA4
A
52 58Right-handed alpha
Helix 5
AA5
A
59 61Right-handed 310
Helix 6
AA6
A
75 82Right-handed alpha
Helix 7
AA7
A
99 107Right-handed alpha
Helix 8
AA8
A
119 136Right-handed alpha
Helix 9
AA9
A
137 147Right-handed alpha
Helix 10
AB1
A
151 157Right-handed alpha
Helix 11
AB2
A
173 184Right-handed alpha
Helix 12
AB3
A
185 187Right-handed 310
Helix 13
AB4
A
200 208Right-handed alpha
Helix 14
AB5
A
214 221Right-handed alpha
Helix 15
AB6
A
240 245Right-handed alpha
Helix 16
AB7
A
258 262Right-handed 310
Helix 17
AB8
A
263 273Right-handed alpha
Helix 18
AB9
A
312 315Right-handed 310
Helix 19
AC1
A
316 336Right-handed alpha
Helix 20
AC2
A
342 344Right-handed 310
Helix 21
AC3
B
10 17Right-handed 310
Helix 22
AC4
B
26 29Right-handed 310
Helix 23
AC5
B
30 37Right-handed alpha
Helix 24
AC6
B
52 58Right-handed alpha
Helix 25
AC7
B
59 61Right-handed 310
Helix 26
AC8
B
75 82Right-handed alpha
Helix 27
AC9
B
99 106Right-handed alpha
Helix 28
AD1
B
119 136Right-handed alpha
Helix 29
AD2
B
137 147Right-handed alpha
Helix 30
AD3
B
151 157Right-handed alpha
Helix 31
AD4
B
173 184Right-handed alpha
Helix 32
AD5
B
185 187Right-handed 310
Helix 33
AD6
B
200 208Right-handed alpha
Helix 34
AD7
B
214 221Right-handed alpha
Helix 35
AD8
B
240 246Right-handed alpha
Helix 36
AD9
B
258 262Right-handed 310
Helix 37
AE1
B
263 273Right-handed alpha
Helix 38
AE2
B
293 298Right-handed alpha
Helix 39
AE3
B
312 315Right-handed 310
Helix 40
AE4
B
316 336Right-handed alpha
Helix 41
AE5
B
342 344Right-handed 310
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There are 4 sheets in PDB entry 6D4B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
2 6parallel
Strand 3
A
63 66parallel
Strand 4
A
87 90parallel
Strand 5
A
111 114parallel
Strand 6
A
346 349anti-parallel
Strand 7
A
352 353anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
A
190 194parallel
Strand 3
A
166 170parallel
Strand 4
A
224 227parallel
Strand 5
A
251 255parallel
Strand 6
A
276 281parallel
Strand 7
A
306 308parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 44first strand
Strand 2
B
2 6parallel
Strand 3
B
63 66parallel
Strand 4
B
87 90parallel
Strand 5
B
111 114parallel
Strand 6
B
346 349anti-parallel
Strand 7
B
352 353anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 211first strand
Strand 2
B
190 194parallel
Strand 3
B
166 170parallel
Strand 4
B
224 227parallel
Strand 5
B
251 255parallel
Strand 6
B
276 281parallel
Strand 7
B
306 308parallel
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