Analysis of interatomic Contacts of Structural Units in PDB entry:
6D4D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D4D entry

There are 2 chains in PDB entry 6D4D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 111GLY 398
B
 TYR 112GLY 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6D4D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
119 141Right-handed alpha
Helix 2
AA2
A
151 156Right-handed alpha
Helix 3
AA3
A
157 163Right-handed 310
Helix 4
AA4
A
211 213Right-handed 310
Helix 5
AA5
A
214 226Right-handed alpha
Helix 6
AA6
A
310 324Right-handed alpha
Helix 7
AA7
A
339 359Right-handed alpha
Helix 8
AA8
A
362 372Right-handed alpha
Helix 9
AA9
A
380 398Right-handed alpha
Helix 10
AB1
B
119 141Right-handed alpha
Helix 11
AB2
B
145 149Right-handed 310
Helix 12
AB3
B
156 163Right-handed 310
Helix 13
AB4
B
211 213Right-handed 310
Helix 14
AB5
B
214 225Right-handed alpha
Helix 15
AB6
B
310 324Right-handed alpha
Helix 16
AB7
B
339 359Right-handed alpha
Helix 17
AB8
B
362 372Right-handed alpha
Helix 18
AB9
B
380 398Right-handed alpha
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There are 6 sheets in PDB entry 6D4D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 116first strand
Strand 2
A
360 361anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
189 197anti-parallel
Strand 3
A
200 207anti-parallel
Strand 4
A
331 334parallel
Strand 5
A
229 232parallel
Strand 6
A
291 298parallel
Strand 7
A
272 281anti-parallel
Strand 8
A
259 268anti-parallel
Strand 9
A
253 256anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
241 242anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 116first strand
Strand 2
B
360 361anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 177first strand
Strand 2
B
189 197anti-parallel
Strand 3
B
200 207anti-parallel
Strand 4
B
331 334parallel
Strand 5
B
229 232parallel
Strand 6
B
291 298parallel
Strand 7
B
272 281anti-parallel
Strand 8
B
259 268anti-parallel
Strand 9
B
253 256anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 238first strand
Strand 2
B
241 242anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il