Analysis of interatomic Contacts of Structural Units in PDB entry:
6D4G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D4G entry

There are 2 chains in PDB entry 6D4G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 14GLY 252
B
 VAL 18ILE 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6D4G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 44Right-handed alpha
Helix 2
AA2
A
59 64Right-handed alpha
Helix 3
AA3
A
115 121Right-handed alpha
Helix 4
AA4
A
135 139Right-handed 310
Helix 5
AA5
A
141 145Right-handed 310
Helix 6
AA6
A
150 152Right-handed 310
Helix 7
AA7
A
173 191Right-handed alpha
Helix 8
AA8
A
201 205Right-handed 310
Helix 9
AA9
A
206 219Right-handed alpha
Helix 10
AB1
A
235 252Right-handed alpha
Helix 11
AB2
B
24 29Right-handed alpha
Helix 12
AB3
B
34 44Right-handed alpha
Helix 13
AB4
B
59 65Right-handed alpha
Helix 14
AB5
B
116 121Right-handed alpha
Helix 15
AB6
B
135 139Right-handed 310
Helix 16
AB7
B
150 152Right-handed 310
Helix 17
AB8
B
173 190Right-handed alpha
Helix 18
AB9
B
201 205Right-handed 310
Helix 19
AC1
B
206 219Right-handed alpha
Helix 20
AC2
B
235 247Right-handed alpha
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There are 7 sheets in PDB entry 6D4G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 79first strand
Strand 2
A
91 96anti-parallel
Strand 3
A
15 19parallel
Strand 4
A
159 165parallel
Strand 5
A
195 200parallel
Strand 6
A
224 227parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
100 101parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
154 156anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 58first strand
Strand 2
B
100 101parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 74first strand
Strand 2
B
95 96anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 126first strand
Strand 2
B
154 156anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 165first strand
Strand 2
B
195 200parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il