Analysis of interatomic Contacts of Structural Units in PDB entry:
6D5B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D5B entry

There are 12 chains in PDB entry 6D5B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 16	SER 168
B	THR 15	SER 168
C	SER 16	SER 168
D	SER 16	SER 168
E	SER 16	SER 168
F	GLY 17	SER 168
G	SER 16	SER 168
H	GLY 17	SER 168
I	SER 16	SER 168
J	SER 16	SER 168
K	SER 16	SER 168
L	SER 16	SER 168

There are 34 helices in PDB entry 6D5B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	78	80	Right-handed 310
Helix 2	AA2	A	106	108	Right-handed 310
Helix 3	AA3	A	135	137	Right-handed 310
Helix 4	AA4	B	78	80	Right-handed 310
Helix 5	AA5	B	106	108	Right-handed 310
Helix 6	AA6	C	78	80	Right-handed 310
Helix 7	AA7	C	106	108	Right-handed 310
Helix 8	AA8	C	135	137	Right-handed 310
Helix 9	AA9	D	78	80	Right-handed 310
Helix 10	AB1	D	106	108	Right-handed 310
Helix 11	AB2	D	135	137	Right-handed 310
Helix 12	AB3	E	78	80	Right-handed 310
Helix 13	AB4	E	106	108	Right-handed 310
Helix 14	AB5	E	135	137	Right-handed 310
Helix 15	AB6	F	78	80	Right-handed 310
Helix 16	AB7	F	106	108	Right-handed 310
Helix 17	AB8	F	135	137	Right-handed 310
Helix 18	AB9	G	78	80	Right-handed 310
Helix 19	AC1	G	106	108	Right-handed 310
Helix 20	AC2	H	78	80	Right-handed 310
Helix 21	AC3	H	106	108	Right-handed 310
Helix 22	AC4	H	135	137	Right-handed 310
Helix 23	AC5	I	78	80	Right-handed 310
Helix 24	AC6	I	106	108	Right-handed 310
Helix 25	AC7	I	135	137	Right-handed 310
Helix 26	AC8	J	78	80	Right-handed 310
Helix 27	AC9	J	106	108	Right-handed 310
Helix 28	AD1	J	135	137	Right-handed 310
Helix 29	AD2	K	78	80	Right-handed 310
Helix 30	AD3	K	106	108	Right-handed 310
Helix 31	AD4	K	135	137	Right-handed 310
Helix 32	AD5	L	78	80	Right-handed 310
Helix 33	AD6	L	106	108	Right-handed 310
Helix 34	AD7	L	135	137	Right-handed 310

There are 60 sheets in PDB entry 6D5B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	43	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	148	149	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	132	133	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	110	111	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	93	first strand
Strand 2	A	96	104	anti-parallel
Strand 3	A	54	60	anti-parallel
Strand 4	A	154	157	anti-parallel
Strand 5	A	160	163	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	71	first strand
Strand 2	A	123	126	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	25	first strand
Strand 2	B	37	43	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	32	first strand
Strand 2	B	132	133	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	110	111	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	93	first strand
Strand 2	B	96	104	anti-parallel
Strand 3	B	54	60	anti-parallel
Strand 4	B	154	157	anti-parallel
Strand 5	B	160	163	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	71	first strand
Strand 2	B	123	126	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	25	first strand
Strand 2	C	37	43	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	32	first strand
Strand 2	C	132	133	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	110	111	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	93	first strand
Strand 2	C	96	104	anti-parallel
Strand 3	C	54	60	anti-parallel
Strand 4	C	153	157	anti-parallel
Strand 5	C	160	163	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	71	first strand
Strand 2	C	123	126	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	25	first strand
Strand 2	D	37	43	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	32	first strand
Strand 2	D	132	133	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	50	first strand
Strand 2	D	110	111	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	93	first strand
Strand 2	D	96	104	anti-parallel
Strand 3	D	54	60	anti-parallel
Strand 4	D	154	157	anti-parallel
Strand 5	D	160	163	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	71	first strand
Strand 2	D	123	126	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	25	first strand
Strand 2	E	37	43	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	32	first strand
Strand 2	E	132	133	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	50	first strand
Strand 2	E	110	111	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	93	first strand
Strand 2	E	96	104	anti-parallel
Strand 3	E	54	60	anti-parallel
Strand 4	E	154	157	anti-parallel
Strand 5	E	160	163	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	71	first strand
Strand 2	E	123	126	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	25	first strand
Strand 2	F	37	43	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	32	first strand
Strand 2	F	132	133	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	50	first strand
Strand 2	F	110	111	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	82	93	first strand
Strand 2	F	96	104	anti-parallel
Strand 3	F	54	60	anti-parallel
Strand 4	F	153	157	anti-parallel
Strand 5	F	160	163	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	71	first strand
Strand 2	F	123	126	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	43	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	148	149	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	32	first strand
Strand 2	G	132	133	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	34	35	first strand
Strand 2	G	123	126	anti-parallel
Strand 3	G	68	71	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	49	50	first strand
Strand 2	G	110	111	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	82	93	first strand
Strand 2	G	96	104	anti-parallel
Strand 3	G	54	60	anti-parallel
Strand 4	G	153	157	anti-parallel
Strand 5	G	160	163	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	37	43	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	148	149	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	31	32	first strand
Strand 2	H	132	133	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	35	first strand
Strand 2	H	123	126	anti-parallel
Strand 3	H	68	71	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	50	first strand
Strand 2	H	110	111	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	82	93	first strand
Strand 2	H	96	104	anti-parallel
Strand 3	H	54	60	anti-parallel
Strand 4	H	153	157	anti-parallel
Strand 5	H	160	163	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	25	first strand
Strand 2	I	37	43	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	31	32	first strand
Strand 2	I	132	133	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	49	50	first strand
Strand 2	I	110	111	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	82	93	first strand
Strand 2	I	96	104	anti-parallel
Strand 3	I	54	60	anti-parallel
Strand 4	I	153	157	anti-parallel
Strand 5	I	160	163	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	68	71	first strand
Strand 2	I	123	126	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	19	25	first strand
Strand 2	J	37	43	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	31	32	first strand
Strand 2	J	132	133	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	35	first strand
Strand 2	J	123	126	anti-parallel
Strand 3	J	68	71	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	49	50	first strand
Strand 2	J	110	111	anti-parallel

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There are 5 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	82	93	first strand
Strand 2	J	96	104	anti-parallel
Strand 3	J	54	60	anti-parallel
Strand 4	J	154	157	anti-parallel
Strand 5	J	160	163	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	25	first strand
Strand 2	K	37	43	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	31	32	first strand
Strand 2	K	132	133	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	49	50	first strand
Strand 2	K	110	111	anti-parallel

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There are 5 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	82	93	first strand
Strand 2	K	96	104	anti-parallel
Strand 3	K	54	60	anti-parallel
Strand 4	K	153	157	anti-parallel
Strand 5	K	160	163	anti-parallel

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There are 2 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	68	71	first strand
Strand 2	K	123	126	anti-parallel

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There are 2 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	25	first strand
Strand 2	L	37	43	anti-parallel

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There are 2 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	31	32	first strand
Strand 2	L	132	133	anti-parallel

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There are 3 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	34	35	first strand
Strand 2	L	123	126	anti-parallel
Strand 3	L	68	71	anti-parallel

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There are 2 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	49	50	first strand
Strand 2	L	110	111	anti-parallel

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There are 5 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	82	93	first strand
Strand 2	L	96	104	anti-parallel
Strand 3	L	54	60	anti-parallel
Strand 4	L	154	157	anti-parallel
Strand 5	L	160	163	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D5B

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D5B