Analysis of interatomic Contacts of Structural Units in PDB entry:
6D5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D5C entry

There are 3 chains in PDB entry 6D5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 14ALA 350
B
 LYS 14ALA 350
C
 LYS 14ALA 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 6D5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 27Right-handed alpha
Helix 2
AA2
A
38 42Right-handed 310
Helix 3
AA3
A
44 55Right-handed alpha
Helix 4
AA4
A
65 69Right-handed alpha
Helix 5
AA5
A
82 95Right-handed alpha
Helix 6
AA6
A
111 116Right-handed 310
Helix 7
AA7
A
124 143Right-handed alpha
Helix 8
AA8
A
168 175Right-handed alpha
Helix 9
AA9
A
176 190Right-handed alpha
Helix 10
AB1
A
204 221Right-handed alpha
Helix 11
AB2
A
240 253Right-handed alpha
Helix 12
AB3
A
281 302Right-handed alpha
Helix 13
AB4
A
315 319Right-handed 310
Helix 14
AB5
A
320 326Right-handed alpha
Helix 15
AB6
A
341 349Right-handed alpha
Helix 16
AB7
B
22 27Right-handed alpha
Helix 17
AB8
B
39 44Right-handed alpha
Helix 18
AB9
B
44 55Right-handed alpha
Helix 19
AC1
B
65 69Right-handed alpha
Helix 20
AC2
B
82 95Right-handed alpha
Helix 21
AC3
B
111 116Right-handed 310
Helix 22
AC4
B
124 143Right-handed alpha
Helix 23
AC5
B
168 175Right-handed alpha
Helix 24
AC6
B
176 190Right-handed alpha
Helix 25
AC7
B
204 221Right-handed alpha
Helix 26
AC8
B
240 253Right-handed alpha
Helix 27
AC9
B
281 302Right-handed alpha
Helix 28
AD1
B
315 319Right-handed 310
Helix 29
AD2
B
320 326Right-handed alpha
Helix 30
AD3
B
341 348Right-handed alpha
Helix 31
AD4
C
22 27Right-handed alpha
Helix 32
AD5
C
38 43Right-handed 310
Helix 33
AD6
C
44 55Right-handed alpha
Helix 34
AD7
C
65 69Right-handed alpha
Helix 35
AD8
C
82 95Right-handed alpha
Helix 36
AD9
C
111 116Right-handed 310
Helix 37
AE1
C
124 143Right-handed alpha
Helix 38
AE2
C
168 175Right-handed alpha
Helix 39
AE3
C
176 190Right-handed alpha
Helix 40
AE4
C
204 221Right-handed alpha
Helix 41
AE5
C
240 252Right-handed alpha
Helix 42
AE6
C
281 302Right-handed alpha
Helix 43
AE7
C
315 318Right-handed 310
Helix 44
AE8
C
319 326Right-handed alpha
Helix 45
AE9
C
341 349Right-handed alpha
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There are 6 sheets in PDB entry 6D5C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
258 267parallel
Strand 3
A
306 311parallel
Strand 4
A
32 37parallel
Strand 5
A
57 60parallel
Strand 6
A
98 105parallel
Strand 7
A
149 154parallel
Strand 8
A
194 199parallel
Strand 9
A
227 230parallel
Strand 10
A
258 267parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
78 80anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 235first strand
Strand 2
B
258 267parallel
Strand 3
B
306 311parallel
Strand 4
B
32 37parallel
Strand 5
B
57 60parallel
Strand 6
B
98 106parallel
Strand 7
B
149 154parallel
Strand 8
B
194 199parallel
Strand 9
B
227 230parallel
Strand 10
B
258 267parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 73first strand
Strand 2
B
78 80anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
233 235first strand
Strand 2
C
258 267parallel
Strand 3
C
306 311parallel
Strand 4
C
32 37parallel
Strand 5
C
57 60parallel
Strand 6
C
98 106parallel
Strand 7
C
149 154parallel
Strand 8
C
194 199parallel
Strand 9
C
227 230parallel
Strand 10
C
258 267parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 73first strand
Strand 2
C
78 80anti-parallel
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