Analysis of interatomic Contacts of Structural Units in PDB entry:
6D5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D5D entry

There is 1 chain in PDB entry 6D5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 17GLY 643
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6D5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 33Right-handed alpha
Helix 2
AA2
A
34 37Right-handed 310
Helix 3
AA3
A
65 83Right-handed alpha
Helix 4
AA4
A
85 99Right-handed alpha
Helix 5
AA5
A
125 129Right-handed 310
Helix 6
AA6
A
144 153Right-handed alpha
Helix 7
AA7
A
216 219Right-handed 310
Helix 8
AA8
A
235 256Right-handed alpha
Helix 9
AA9
A
258 277Right-handed alpha
Helix 10
AB1
A
278 281Right-handed 310
Helix 11
AB2
A
300 304Right-handed 310
Helix 12
AB3
A
334 336Right-handed 310
Helix 13
AB4
A
337 347Right-handed alpha
Helix 14
AB5
A
348 351Right-handed 310
Helix 15
AB6
A
356 375Right-handed alpha
Helix 16
AB7
A
389 393Right-handed 310
Helix 17
AB8
A
424 442Right-handed alpha
Helix 18
AB9
A
443 461Right-handed alpha
Helix 19
AC1
A
504 526Right-handed alpha
Helix 20
AC2
A
529 547Right-handed alpha
Helix 21
AC3
A
560 562Right-handed 310
Helix 22
AC4
A
563 568Right-handed alpha
Helix 23
AC5
A
591 602Right-handed 310
Helix 24
AC6
A
604 614Right-handed alpha
Helix 25
AC7
A
624 643Right-handed alpha
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There are 8 sheets in PDB entry 6D5D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
163 165anti-parallel
Strand 3
A
183 186anti-parallel
Strand 4
A
202 203anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
221 222parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
229 233anti-parallel
Strand 3
A
313 317anti-parallel
Strand 4
A
323 326anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 332first strand
Strand 2
A
385 387anti-parallel
Strand 3
A
407 410anti-parallel
Strand 4
A
403 404anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 463first strand
Strand 2
A
469 478anti-parallel
Strand 3
A
495 502anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
548 549first strand
Strand 2
A
552 553anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
557 558first strand
Strand 2
A
619 620anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
578 579first strand
Strand 2
A
585 586anti-parallel
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