Analysis of interatomic Contacts of Structural Units in PDB entry:
6D5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D5J entry

There are 4 chains in PDB entry 6D5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 50
A
 LEU 52HIS 166
B
 GLY 565ARG 1046
C
 GLY 0HIS 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6D5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 26Right-handed alpha
Helix 2
AA2
A
61 65Right-handed 310
Helix 3
AA3
A
68 75Right-handed alpha
Helix 4
AA4
A
86 92Right-handed alpha
Helix 5
AA5
A
92 105Right-handed alpha
Helix 6
AA6
A
126 138Right-handed alpha
Helix 7
AA7
A
151 165Right-handed alpha
Helix 8
AA8
B
575 579Right-handed 310
Helix 9
AA9
B
605 614Right-handed alpha
Helix 10
AB1
B
620 631Right-handed alpha
Helix 11
AB2
B
632 634Right-handed 310
Helix 12
AB3
B
636 649Right-handed alpha
Helix 13
AB4
B
656 665Right-handed alpha
Helix 14
AB5
B
671 681Right-handed alpha
Helix 15
AB6
B
681 700Right-handed alpha
Helix 16
AB7
B
701 706Right-handed alpha
Helix 17
AB8
B
707 720Right-handed alpha
Helix 18
AB9
B
726 743Right-handed alpha
Helix 19
AC1
B
770 774Right-handed 310
Helix 20
AC2
B
780 798Right-handed alpha
Helix 21
AC3
B
800 811Right-handed 310
Helix 22
AC4
B
813 818Right-handed alpha
Helix 23
AC5
B
818 841Right-handed alpha
Helix 24
AC6
B
844 865Right-handed alpha
Helix 25
AC7
B
867 879Right-handed alpha
Helix 26
AC8
B
880 885Right-handed alpha
Helix 27
AC9
B
886 893Right-handed alpha
Helix 28
AD1
B
894 920Right-handed alpha
Helix 29
AD2
B
930 943Right-handed alpha
Helix 30
AD3
B
958 975Right-handed alpha
Helix 31
AD4
B
984 993Right-handed alpha
Helix 32
AD5
B
1001 1017Right-handed alpha
Helix 33
AD6
C
17 25Right-handed alpha
Helix 34
AD7
C
64 66Right-handed 310
Helix 35
AD8
C
67 74Right-handed alpha
Helix 36
AD9
C
86 92Right-handed alpha
Helix 37
AE1
C
92 105Right-handed alpha
Helix 38
AE2
C
126 138Right-handed alpha
Helix 39
AE3
C
151 165Right-handed alpha
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There are 3 sheets in PDB entry 6D5J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 46first strand
Strand 2
A
49 58anti-parallel
Strand 3
A
2 10parallel
Strand 4
A
77 83parallel
Strand 5
A
111 116parallel
Strand 6
A
141 143parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
586 588first strand
Strand 2
B
601 604anti-parallel
Strand 3
B
953 957anti-parallel
Strand 4
B
947 950anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 46first strand
Strand 2
C
49 57anti-parallel
Strand 3
C
2 10parallel
Strand 4
C
77 83parallel
Strand 5
C
111 117parallel
Strand 6
C
141 145parallel
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