Analysis of interatomic Contacts of Structural Units in PDB entry:
6D65


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D65 entry

There are 4 chains in PDB entry 6D65 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2VAL 512
B
 ASP 13LYS 167
C
 ILE 3LEU 513
D
 SER 12LYS 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 6D65. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 33Right-handed alpha
Helix 2
AA2
A
43 54Right-handed alpha
Helix 3
AA3
A
67 74Right-handed alpha
Helix 4
AA4
A
83 88Right-handed alpha
Helix 5
AA5
A
91 97Right-handed alpha
Helix 6
AA6
A
129 131Right-handed 310
Helix 7
AA7
A
132 142Right-handed alpha
Helix 8
AA8
A
154 165Right-handed alpha
Helix 9
AA9
A
186 202Right-handed alpha
Helix 10
AB1
A
210 220Right-handed alpha
Helix 11
AB2
A
229 231Right-handed 310
Helix 12
AB3
A
232 240Right-handed alpha
Helix 13
AB4
A
273 284Right-handed alpha
Helix 14
AB5
A
287 298Right-handed alpha
Helix 15
AB6
A
305 313Right-handed alpha
Helix 16
AB7
A
315 328Right-handed alpha
Helix 17
AB8
A
336 353Right-handed alpha
Helix 18
AB9
A
357 371Right-handed alpha
Helix 19
AC1
A
387 390Right-handed 310
Helix 20
AC2
A
391 398Right-handed alpha
Helix 21
AC3
A
432 435Right-handed 310
Helix 22
AC4
A
436 450Right-handed alpha
Helix 23
AC5
A
463 478Right-handed alpha
Helix 24
AC6
A
480 490Right-handed alpha
Helix 25
AC7
A
498 511Right-handed alpha
Helix 26
AC8
B
14 25Right-handed alpha
Helix 27
AC9
B
26 36Right-handed alpha
Helix 28
AD1
B
49 58Right-handed alpha
Helix 29
AD2
B
59 69Right-handed alpha
Helix 30
AD3
B
82 90Right-handed alpha
Helix 31
AD4
B
92 102Right-handed alpha
Helix 32
AD5
B
115 124Right-handed alpha
Helix 33
AD6
B
125 135Right-handed alpha
Helix 34
AD7
B
148 156Right-handed alpha
Helix 35
AD8
B
158 166Right-handed alpha
Helix 36
AD9
C
17 33Right-handed alpha
Helix 37
AE1
C
43 54Right-handed alpha
Helix 38
AE2
C
67 74Right-handed alpha
Helix 39
AE3
C
83 88Right-handed alpha
Helix 40
AE4
C
91 96Right-handed alpha
Helix 41
AE5
C
129 131Right-handed 310
Helix 42
AE6
C
132 142Right-handed alpha
Helix 43
AE7
C
154 163Right-handed alpha
Helix 44
AE8
C
186 202Right-handed alpha
Helix 45
AE9
C
210 220Right-handed alpha
Helix 46
AF1
C
229 231Right-handed 310
Helix 47
AF2
C
232 239Right-handed alpha
Helix 48
AF3
C
273 284Right-handed alpha
Helix 49
AF4
C
287 298Right-handed alpha
Helix 50
AF5
C
305 313Right-handed alpha
Helix 51
AF6
C
315 328Right-handed alpha
Helix 52
AF7
C
336 353Right-handed alpha
Helix 53
AF8
C
357 371Right-handed alpha
Helix 54
AF9
C
387 390Right-handed 310
Helix 55
AG1
C
391 398Right-handed alpha
Helix 56
AG2
C
432 435Right-handed 310
Helix 57
AG3
C
436 450Right-handed alpha
Helix 58
AG4
C
463 478Right-handed alpha
Helix 59
AG5
C
480 490Right-handed alpha
Helix 60
AG6
C
498 513Right-handed alpha
Helix 61
AG7
D
13 25Right-handed alpha
Helix 62
AG8
D
26 36Right-handed alpha
Helix 63
AG9
D
49 58Right-handed alpha
Helix 64
AH1
D
59 69Right-handed alpha
Helix 65
AH2
D
82 90Right-handed alpha
Helix 66
AH3
D
92 102Right-handed alpha
Helix 67
AH4
D
115 124Right-handed alpha
Helix 68
AH5
D
125 135Right-handed alpha
Helix 69
AH6
D
148 156Right-handed alpha
Helix 70
AH7
D
158 166Right-handed alpha
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There are 14 sheets in PDB entry 6D65. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
7 11parallel
Strand 3
A
60 64parallel
Strand 4
A
263 267anti-parallel
Strand 5
A
107 108anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
103 104anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
302 303anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
223 228parallel
Strand 3
A
115 119anti-parallel
Strand 4
A
243 246anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 173first strand
Strand 2
A
176 183anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 260first strand
Strand 2
A
329 330parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 378first strand
Strand 2
A
381 385anti-parallel
Strand 3
A
454 458parallel
Strand 4
A
402 406parallel
Strand 5
A
419 423parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 39first strand
Strand 2
C
7 11parallel
Strand 3
C
60 64parallel
Strand 4
C
259 267anti-parallel
Strand 5
C
107 112anti-parallel
Strand 6
C
302 303anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 39first strand
Strand 2
C
7 11parallel
Strand 3
C
60 64parallel
Strand 4
C
259 267anti-parallel
Strand 5
C
329 330parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
99 100first strand
Strand 2
C
103 104anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 148first strand
Strand 2
C
223 228parallel
Strand 3
C
115 119anti-parallel
Strand 4
C
243 246anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
168 173first strand
Strand 2
C
176 183anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
250 251first strand
Strand 2
C
254 255anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
375 378first strand
Strand 2
C
381 385anti-parallel
Strand 3
C
454 458parallel
Strand 4
C
402 406parallel
Strand 5
C
419 423parallel
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