Analysis of interatomic Contacts of Structural Units in PDB entry:
6D67


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D67 entry

There are 2 chains in PDB entry 6D67 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2HIS 515
B
 HIS 8LEU 135
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 6D67. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 33Right-handed alpha
Helix 2
AA2
A
43 54Right-handed alpha
Helix 3
AA3
A
67 74Right-handed alpha
Helix 4
AA4
A
83 88Right-handed alpha
Helix 5
AA5
A
91 98Right-handed alpha
Helix 6
AA6
A
132 143Right-handed alpha
Helix 7
AA7
A
154 165Right-handed alpha
Helix 8
AA8
A
186 202Right-handed alpha
Helix 9
AA9
A
210 220Right-handed alpha
Helix 10
AB1
A
229 231Right-handed 310
Helix 11
AB2
A
232 239Right-handed alpha
Helix 12
AB3
A
273 284Right-handed alpha
Helix 13
AB4
A
287 298Right-handed alpha
Helix 14
AB5
A
305 309Right-handed 310
Helix 15
AB6
A
315 328Right-handed alpha
Helix 16
AB7
A
336 353Right-handed alpha
Helix 17
AB8
A
357 371Right-handed alpha
Helix 18
AB9
A
386 391Right-handed alpha
Helix 19
AC1
A
391 399Right-handed alpha
Helix 20
AC2
A
433 435Right-handed 310
Helix 21
AC3
A
436 450Right-handed alpha
Helix 22
AC4
A
463 478Right-handed alpha
Helix 23
AC5
A
480 492Right-handed alpha
Helix 24
AC6
A
498 513Right-handed alpha
Helix 25
AC7
B
9 25Right-handed alpha
Helix 26
AC8
B
26 36Right-handed alpha
Helix 27
AC9
B
49 57Right-handed alpha
Helix 28
AD1
B
59 69Right-handed alpha
Helix 29
AD2
B
82 90Right-handed alpha
Helix 30
AD3
B
92 102Right-handed alpha
Helix 31
AD4
B
115 123Right-handed alpha
Helix 32
AD5
B
125 134Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 6D67. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
8 11parallel
Strand 3
A
60 64parallel
Strand 4
A
259 268anti-parallel
Strand 5
A
107 112anti-parallel
Strand 6
A
302 303anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
259 268anti-parallel
Strand 3
A
329 330parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
103 104anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
223 228parallel
Strand 3
A
115 119anti-parallel
Strand 4
A
243 246anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 173first strand
Strand 2
A
176 183anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
254 255anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 378first strand
Strand 2
A
381 385anti-parallel
Strand 3
A
454 458parallel
Strand 4
A
402 406parallel
Strand 5
A
419 423parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il