Analysis of interatomic Contacts of Structural Units in PDB entry:
6D69


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D69 entry

There is 1 chain in PDB entry 6D69 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1062PHE 1353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6D69. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1066 1073Right-handed alpha
Helix 2
AA2
A
1110 1113Right-handed 310
Helix 3
AA3
A
1157 1160Right-handed 310
Helix 4
AA4
A
1204 1207Right-handed 310
Helix 5
AA5
A
1251 1254Right-handed 310
Helix 6
AA6
A
1299 1301Right-handed 310
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There are 8 sheets in PDB entry 6D69. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1079 1082first strand
Strand 2
A
1349 1352anti-parallel
Strand 3
A
1340 1344anti-parallel
Strand 4
A
1329 1334anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1097 1099first strand
Strand 2
A
1105 1109anti-parallel
Strand 3
A
1114 1118anti-parallel
Strand 4
A
1124 1128anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1130 1131first strand
Strand 2
A
1137 1138parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1145 1146first strand
Strand 2
A
1152 1156anti-parallel
Strand 3
A
1161 1165anti-parallel
Strand 4
A
1171 1175anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1191 1193first strand
Strand 2
A
1199 1203anti-parallel
Strand 3
A
1208 1212anti-parallel
Strand 4
A
1218 1222anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1238 1240first strand
Strand 2
A
1245 1250anti-parallel
Strand 3
A
1255 1260anti-parallel
Strand 4
A
1265 1269anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1282 1287first strand
Strand 2
A
1293 1297anti-parallel
Strand 3
A
1302 1306anti-parallel
Strand 4
A
1312 1316anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1318 1319first strand
Strand 2
A
1325 1326parallel
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