Analysis of interatomic Contacts of Structural Units in PDB entry:
6D6C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D6C entry

There are 12 chains in PDB entry 6D6C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 3	PHE 167
B	ALA 2	PHE 167
C	GLY 6	HIS 169
D	ALA 2	PHE 167
E	LEU 3	PHE 167
F	LEU 3	HIS 169
G	PHE 7	GLU 168
H	VAL 4	GLU 168
I	PHE 7	GLU 168
J	GLY 6	PHE 167
K	VAL 4	PHE 167
L	ASP 5	GLU 168

There are108 helices in PDB entry 6D6C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	13	Right-handed alpha
Helix 2	AA2	A	15	31	Right-handed alpha
Helix 3	AA3	A	46	50	Right-handed 310
Helix 4	AA4	A	57	67	Right-handed alpha
Helix 5	AA5	A	68	72	Right-handed 310
Helix 6	AA6	A	73	82	Right-handed alpha
Helix 7	AA7	A	89	93	Right-handed 310
Helix 8	AA8	A	95	108	Right-handed alpha
Helix 9	AA9	A	136	167	Right-handed alpha
Helix 10	AB1	B	3	12	Right-handed alpha
Helix 11	AB2	B	14	31	Right-handed alpha
Helix 12	AB3	B	46	50	Right-handed 310
Helix 13	AB4	B	57	68	Right-handed alpha
Helix 14	AB5	B	69	72	Right-handed 310
Helix 15	AB6	B	73	82	Right-handed alpha
Helix 16	AB7	B	89	93	Right-handed 310
Helix 17	AB8	B	95	108	Right-handed alpha
Helix 18	AB9	B	136	167	Right-handed alpha
Helix 19	AC1	C	7	13	Right-handed alpha
Helix 20	AC2	C	14	30	Right-handed alpha
Helix 21	AC3	C	46	50	Right-handed 310
Helix 22	AC4	C	57	67	Right-handed alpha
Helix 23	AC5	C	68	72	Right-handed 310
Helix 24	AC6	C	73	80	Right-handed alpha
Helix 25	AC7	C	89	93	Right-handed 310
Helix 26	AC8	C	95	108	Right-handed alpha
Helix 27	AC9	C	136	168	Right-handed alpha
Helix 28	AD1	D	3	13	Right-handed alpha
Helix 29	AD2	D	15	31	Right-handed alpha
Helix 30	AD3	D	46	50	Right-handed 310
Helix 31	AD4	D	57	67	Right-handed alpha
Helix 32	AD5	D	68	72	Right-handed 310
Helix 33	AD6	D	73	82	Right-handed alpha
Helix 34	AD7	D	89	93	Right-handed 310
Helix 35	AD8	D	95	108	Right-handed alpha
Helix 36	AD9	D	136	167	Right-handed alpha
Helix 37	AE1	E	4	13	Right-handed alpha
Helix 38	AE2	E	15	31	Right-handed alpha
Helix 39	AE3	E	46	50	Right-handed 310
Helix 40	AE4	E	57	68	Right-handed alpha
Helix 41	AE5	E	69	72	Right-handed 310
Helix 42	AE6	E	73	82	Right-handed alpha
Helix 43	AE7	E	89	93	Right-handed 310
Helix 44	AE8	E	95	108	Right-handed alpha
Helix 45	AE9	E	136	167	Right-handed alpha
Helix 46	AF1	F	4	13	Right-handed alpha
Helix 47	AF2	F	14	31	Right-handed alpha
Helix 48	AF3	F	46	50	Right-handed 310
Helix 49	AF4	F	57	67	Right-handed alpha
Helix 50	AF5	F	68	72	Right-handed 310
Helix 51	AF6	F	73	82	Right-handed alpha
Helix 52	AF7	F	89	93	Right-handed 310
Helix 53	AF8	F	95	108	Right-handed alpha
Helix 54	AF9	F	136	168	Right-handed alpha
Helix 55	AG1	G	8	13	Right-handed alpha
Helix 56	AG2	G	14	31	Right-handed alpha
Helix 57	AG3	G	46	50	Right-handed 310
Helix 58	AG4	G	57	67	Right-handed alpha
Helix 59	AG5	G	68	72	Right-handed 310
Helix 60	AG6	G	73	80	Right-handed alpha
Helix 61	AG7	G	89	93	Right-handed 310
Helix 62	AG8	G	95	108	Right-handed alpha
Helix 63	AG9	G	136	168	Right-handed alpha
Helix 64	AH1	H	4	7	Right-handed 310
Helix 65	AH2	H	8	13	Right-handed alpha
Helix 66	AH3	H	15	30	Right-handed alpha
Helix 67	AH4	H	57	67	Right-handed alpha
Helix 68	AH5	H	68	72	Right-handed 310
Helix 69	AH6	H	73	82	Right-handed alpha
Helix 70	AH7	H	89	93	Right-handed 310
Helix 71	AH8	H	95	108	Right-handed alpha
Helix 72	AH9	H	136	168	Right-handed alpha
Helix 73	AI1	I	8	13	Right-handed alpha
Helix 74	AI2	I	15	31	Right-handed alpha
Helix 75	AI3	I	46	50	Right-handed 310
Helix 76	AI4	I	57	67	Right-handed alpha
Helix 77	AI5	I	68	72	Right-handed 310
Helix 78	AI6	I	73	82	Right-handed alpha
Helix 79	AI7	I	89	93	Right-handed 310
Helix 80	AI8	I	95	108	Right-handed alpha
Helix 81	AI9	I	136	167	Right-handed alpha
Helix 82	AJ1	J	15	31	Right-handed alpha
Helix 83	AJ2	J	46	50	Right-handed 310
Helix 84	AJ3	J	57	67	Right-handed alpha
Helix 85	AJ4	J	68	72	Right-handed 310
Helix 86	AJ5	J	73	82	Right-handed alpha
Helix 87	AJ6	J	89	93	Right-handed 310
Helix 88	AJ7	J	95	108	Right-handed alpha
Helix 89	AJ8	J	136	166	Right-handed alpha
Helix 90	AJ9	K	5	13	Right-handed alpha
Helix 91	AK1	K	15	31	Right-handed alpha
Helix 92	AK2	K	46	50	Right-handed 310
Helix 93	AK3	K	57	67	Right-handed alpha
Helix 94	AK4	K	68	72	Right-handed 310
Helix 95	AK5	K	73	82	Right-handed alpha
Helix 96	AK6	K	89	93	Right-handed 310
Helix 97	AK7	K	95	108	Right-handed alpha
Helix 98	AK8	K	136	167	Right-handed alpha
Helix 99	AK9	L	5	10	Right-handed 310
Helix 100	AL1	L	15	30	Right-handed alpha
Helix 101	AL2	L	46	50	Right-handed 310
Helix 102	AL3	L	57	67	Right-handed alpha
Helix 103	AL4	L	68	72	Right-handed 310
Helix 104	AL5	L	73	82	Right-handed alpha
Helix 105	AL6	L	89	93	Right-handed 310
Helix 106	AL7	L	95	108	Right-handed alpha
Helix 107	AL8	L	136	146	Right-handed alpha
Helix 108	AL9	L	147	168	Right-handed alpha

There are 12 sheets in PDB entry 6D6C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	54	first strand
Strand 2	A	34	40	anti-parallel
Strand 3	A	125	132	anti-parallel
Strand 4	A	112	119	anti-parallel
Strand 5	A	86	87	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	35	40	anti-parallel
Strand 3	B	125	132	anti-parallel
Strand 4	B	112	119	anti-parallel
Strand 5	B	86	87	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	54	first strand
Strand 2	C	34	40	anti-parallel
Strand 3	C	125	131	anti-parallel
Strand 4	C	113	119	anti-parallel
Strand 5	C	86	87	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	54	first strand
Strand 2	D	34	40	anti-parallel
Strand 3	D	125	132	anti-parallel
Strand 4	D	112	119	anti-parallel
Strand 5	D	86	87	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	54	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	E	125	132	anti-parallel
Strand 4	E	112	119	anti-parallel
Strand 5	E	86	87	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	54	first strand
Strand 2	F	34	40	anti-parallel
Strand 3	F	125	131	anti-parallel
Strand 4	F	113	119	anti-parallel
Strand 5	F	86	87	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	51	54	first strand
Strand 2	G	34	40	anti-parallel
Strand 3	G	125	131	anti-parallel
Strand 4	G	113	119	anti-parallel
Strand 5	G	86	87	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	54	first strand
Strand 2	H	34	40	anti-parallel
Strand 3	H	125	132	anti-parallel
Strand 4	H	112	119	anti-parallel
Strand 5	H	86	87	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	51	54	first strand
Strand 2	I	34	40	anti-parallel
Strand 3	I	125	132	anti-parallel
Strand 4	I	112	119	anti-parallel
Strand 5	I	86	87	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	51	54	first strand
Strand 2	J	34	40	anti-parallel
Strand 3	J	125	132	anti-parallel
Strand 4	J	112	119	anti-parallel
Strand 5	J	86	87	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	51	54	first strand
Strand 2	K	34	40	anti-parallel
Strand 3	K	125	132	anti-parallel
Strand 4	K	112	119	anti-parallel
Strand 5	K	86	87	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	51	54	first strand
Strand 2	L	34	40	anti-parallel
Strand 3	L	125	132	anti-parallel
Strand 4	L	112	119	anti-parallel
Strand 5	L	86	87	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D6C

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D6C