Analysis of interatomic Contacts of Structural Units in PDB entry:
6D6I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D6I entry

There are 6 chains in PDB entry 6D6I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 12ASN 147
B
 GLY 3ASN 150
C
 MET 1LEU 73
D
 PRO 12ASN 147
E
 GLY 3ASN 150
F
 MET 1LEU 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6D6I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 26Right-handed alpha
Helix 2
AA2
A
101 104Right-handed 310
Helix 3
AA3
A
105 110Right-handed alpha
Helix 4
AA4
A
116 128Right-handed alpha
Helix 5
AA5
A
130 135Right-handed alpha
Helix 6
AA6
B
5 18Right-handed alpha
Helix 7
AA7
B
88 93Right-handed alpha
Helix 8
AA8
B
100 114Right-handed alpha
Helix 9
AA9
B
125 132Right-handed alpha
Helix 10
AB1
B
132 147Right-handed alpha
Helix 11
AB2
C
22 35Right-handed alpha
Helix 12
AB3
C
55 60Right-handed 310
Helix 13
AB4
D
13 26Right-handed alpha
Helix 14
AB5
D
101 104Right-handed 310
Helix 15
AB6
D
105 110Right-handed alpha
Helix 16
AB7
D
116 128Right-handed alpha
Helix 17
AB8
D
130 135Right-handed alpha
Helix 18
AB9
E
5 18Right-handed alpha
Helix 19
AC1
E
88 93Right-handed alpha
Helix 20
AC2
E
100 114Right-handed alpha
Helix 21
AC3
E
125 132Right-handed alpha
Helix 22
AC4
E
132 147Right-handed alpha
Helix 23
AC5
F
22 35Right-handed alpha
Helix 24
AC6
F
37 39Right-handed 310
Helix 25
AC7
F
55 60Right-handed 310
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There are 6 sheets in PDB entry 6D6I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
47 53anti-parallel
Strand 3
A
64 70anti-parallel
Strand 4
A
81 84anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 27first strand
Strand 2
B
35 38anti-parallel
Strand 3
B
53 57anti-parallel
Strand 4
B
68 71anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
2 7anti-parallel
Strand 3
C
66 71parallel
Strand 4
C
41 44anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 37first strand
Strand 2
D
47 53anti-parallel
Strand 3
D
64 70anti-parallel
Strand 4
D
81 84anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
24 27first strand
Strand 2
E
35 39anti-parallel
Strand 3
E
52 57anti-parallel
Strand 4
E
68 71anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 16first strand
Strand 2
F
2 7anti-parallel
Strand 3
F
66 71parallel
Strand 4
F
41 45anti-parallel
Strand 5
F
48 49anti-parallel
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