Analysis of interatomic Contacts of Structural Units in PDB entry:
6D6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D6J entry

There are 2 chains in PDB entry 6D6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2GLY 113
B
 MET 1GLY 113
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6D6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 10Right-handed alpha
Helix 2
AA2
A
48 52Right-handed 310
Helix 3
AA3
A
53 55Right-handed 310
Helix 4
AA4
A
56 74Right-handed alpha
Helix 5
AA5
A
88 92Right-handed 310
Helix 6
AA6
B
3 10Right-handed alpha
Helix 7
AA7
B
48 52Right-handed 310
Helix 8
AA8
B
53 74Right-handed alpha
Helix 9
AA9
B
88 92Right-handed 310
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There is 1 sheet (AA1) in PDB entry 6D6J.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 20first strand
Strand 2
A
24 28anti-parallel
Strand 3
A
36 42anti-parallel
Strand 4
A
100 104anti-parallel
Strand 5
A
81 87anti-parallel
Strand 6
B
81 87anti-parallel
Strand 7
B
100 104anti-parallel
Strand 8
B
36 42anti-parallel
Strand 9
B
24 28anti-parallel
Strand 10
B
17 20anti-parallel
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