Analysis of interatomic Contacts of Structural Units in PDB entry:
6D6K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D6K entry

There are 2 chains in PDB entry 6D6K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	PRO 564
B	SER 2	GLU 558

There are 32 helices in PDB entry 6D6K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	68	72	Right-handed 310
Helix 2	AA2	A	86	101	Right-handed alpha
Helix 3	AA3	A	102	104	Right-handed 310
Helix 4	AA4	A	127	141	Right-handed alpha
Helix 5	AA5	A	167	172	Right-handed alpha
Helix 6	AA6	A	198	213	Right-handed alpha
Helix 7	AA7	A	213	227	Right-handed alpha
Helix 8	AA8	A	255	261	Right-handed 310
Helix 9	AA9	A	263	282	Right-handed alpha
Helix 10	AB1	A	293	313	Right-handed alpha
Helix 11	AB2	A	360	364	Right-handed 310
Helix 12	AB3	A	385	390	Right-handed 310
Helix 13	AB4	A	399	415	Right-handed alpha
Helix 14	AB5	A	439	456	Right-handed alpha
Helix 15	AB6	A	484	491	Right-handed alpha
Helix 16	AB7	A	517	541	Right-handed alpha
Helix 17	AB8	B	68	72	Right-handed 310
Helix 18	AB9	B	86	101	Right-handed alpha
Helix 19	AC1	B	102	104	Right-handed 310
Helix 20	AC2	B	127	141	Right-handed alpha
Helix 21	AC3	B	167	172	Right-handed alpha
Helix 22	AC4	B	198	213	Right-handed alpha
Helix 23	AC5	B	213	227	Right-handed alpha
Helix 24	AC6	B	240	259	Right-handed alpha
Helix 25	AC7	B	263	283	Right-handed alpha
Helix 26	AC8	B	291	313	Right-handed alpha
Helix 27	AC9	B	360	364	Right-handed 310
Helix 28	AD1	B	385	390	Right-handed 310
Helix 29	AD2	B	399	415	Right-handed alpha
Helix 30	AD3	B	439	456	Right-handed alpha
Helix 31	AD4	B	487	491	Right-handed 310
Helix 32	AD5	B	517	541	Right-handed alpha

There are 8 sheets in PDB entry 6D6K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	13	first strand
Strand 2	A	16	22	anti-parallel
Strand 3	A	30	36	anti-parallel
Strand 4	A	39	47	anti-parallel
Strand 5	A	112	121	anti-parallel
Strand 6	A	60	66	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	164	first strand
Strand 2	A	151	158	anti-parallel
Strand 3	A	176	182	anti-parallel
Strand 4	A	187	197	anti-parallel
Strand 5	A	504	511	anti-parallel
Strand 6	A	493	499	anti-parallel
Strand 7	A	464	473	anti-parallel
Strand 8	A	476	481	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	333	first strand
Strand 2	A	341	347	anti-parallel
Strand 3	A	350	359	anti-parallel
Strand 4	A	426	435	anti-parallel
Strand 5	A	378	383	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	369	first strand
Strand 2	A	372	376	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	560	563	first strand
Strand 2	B	372	376	anti-parallel
Strand 3	B	365	369	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	13	first strand
Strand 2	B	16	22	anti-parallel
Strand 3	B	30	36	anti-parallel
Strand 4	B	39	47	anti-parallel
Strand 5	B	112	121	anti-parallel
Strand 6	B	60	66	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	164	first strand
Strand 2	B	151	158	anti-parallel
Strand 3	B	176	182	anti-parallel
Strand 4	B	187	197	anti-parallel
Strand 5	B	504	511	anti-parallel
Strand 6	B	493	499	anti-parallel
Strand 7	B	464	473	anti-parallel
Strand 8	B	476	481	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	333	first strand
Strand 2	B	341	347	anti-parallel
Strand 3	B	350	359	anti-parallel
Strand 4	B	426	435	anti-parallel
Strand 5	B	378	383	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D6K

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D6K