Analysis of interatomic Contacts of Structural Units in PDB entry:
6D6W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D6W entry

There are 4 chains in PDB entry 6D6W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 25	LYS 603
B	ALA 25	LYS 603
C	ALA 25	LYS 603
D	ALA 25	LYS 603

There are 52 helices in PDB entry 6D6W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	34	Right-handed 310
Helix 2	AA2	A	65	69	Right-handed 310
Helix 3	AA3	A	82	86	Right-handed 310
Helix 4	AA4	A	99	103	Right-handed 310
Helix 5	AA5	A	245	248	Right-handed 310
Helix 6	AA6	A	334	349	Right-handed alpha
Helix 7	AA7	A	361	372	Right-handed alpha
Helix 8	AA8	A	389	408	Right-handed alpha
Helix 9	AA9	A	425	443	Right-handed alpha
Helix 10	AB1	A	466	472	Right-handed 310
Helix 11	AB2	A	487	493	Right-handed 310
Helix 12	AB3	A	526	542	Right-handed alpha
Helix 13	AB4	A	585	602	Right-handed alpha
Helix 14	AB5	B	30	34	Right-handed 310
Helix 15	AB6	B	65	69	Right-handed 310
Helix 16	AB7	B	82	86	Right-handed 310
Helix 17	AB8	B	99	103	Right-handed 310
Helix 18	AB9	B	245	248	Right-handed 310
Helix 19	AC1	B	334	348	Right-handed alpha
Helix 20	AC2	B	361	372	Right-handed alpha
Helix 21	AC3	B	389	408	Right-handed alpha
Helix 22	AC4	B	425	443	Right-handed alpha
Helix 23	AC5	B	466	472	Right-handed 310
Helix 24	AC6	B	487	493	Right-handed 310
Helix 25	AC7	B	526	542	Right-handed alpha
Helix 26	AC8	B	585	602	Right-handed alpha
Helix 27	AC9	C	30	34	Right-handed 310
Helix 28	AD1	C	65	69	Right-handed 310
Helix 29	AD2	C	82	86	Right-handed 310
Helix 30	AD3	C	99	103	Right-handed 310
Helix 31	AD4	C	245	248	Right-handed 310
Helix 32	AD5	C	334	348	Right-handed alpha
Helix 33	AD6	C	361	372	Right-handed alpha
Helix 34	AD7	C	389	408	Right-handed alpha
Helix 35	AD8	C	425	443	Right-handed alpha
Helix 36	AD9	C	466	472	Right-handed 310
Helix 37	AE1	C	489	494	Right-handed alpha
Helix 38	AE2	C	526	542	Right-handed alpha
Helix 39	AE3	C	585	602	Right-handed alpha
Helix 40	AE4	D	30	34	Right-handed 310
Helix 41	AE5	D	65	69	Right-handed 310
Helix 42	AE6	D	82	86	Right-handed 310
Helix 43	AE7	D	99	103	Right-handed 310
Helix 44	AE8	D	245	248	Right-handed 310
Helix 45	AE9	D	334	349	Right-handed alpha
Helix 46	AF1	D	361	372	Right-handed alpha
Helix 47	AF2	D	389	408	Right-handed alpha
Helix 48	AF3	D	425	443	Right-handed alpha
Helix 49	AF4	D	466	472	Right-handed 310
Helix 50	AF5	D	489	494	Right-handed alpha
Helix 51	AF6	D	526	542	Right-handed alpha
Helix 52	AF7	D	585	602	Right-handed alpha

There are 35 sheets in PDB entry 6D6W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	200	205	anti-parallel
Strand 3	A	124	129	anti-parallel
Strand 4	A	155	158	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	91	first strand
Strand 2	A	41	47	anti-parallel
Strand 3	A	108	115	anti-parallel
Strand 4	A	168	175	anti-parallel
Strand 5	A	135	140	anti-parallel
Strand 6	A	143	149	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	133	first strand
Strand 2	A	195	196	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	217	first strand
Strand 2	A	224	232	anti-parallel
Strand 3	A	260	266	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	254	first strand
Strand 2	A	239	244	anti-parallel
Strand 3	A	280	286	anti-parallel
Strand 4	A	290	295	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	303	first strand
Strand 2	A	306	309	anti-parallel
Strand 3	A	312	314	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	321	first strand
Strand 2	A	352	355	parallel
Strand 3	A	374	378	parallel
Strand 4	A	413	420	parallel
Strand 5	A	447	453	parallel
Strand 6	A	475	478	parallel
Strand 7	A	504	508	parallel
Strand 8	A	547	550	parallel
Strand 9	A	316	321	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	458	first strand
Strand 2	A	461	463	anti-parallel
Strand 3	A	495	496	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	559	first strand
Strand 2	A	572	573	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	200	205	anti-parallel
Strand 3	B	124	129	anti-parallel
Strand 4	B	155	158	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	91	first strand
Strand 2	B	41	47	anti-parallel
Strand 3	B	108	115	anti-parallel
Strand 4	B	168	175	anti-parallel
Strand 5	B	135	140	anti-parallel
Strand 6	B	143	149	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	217	first strand
Strand 2	B	224	232	anti-parallel
Strand 3	B	260	266	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	254	first strand
Strand 2	B	239	244	anti-parallel
Strand 3	B	280	285	anti-parallel
Strand 4	B	290	295	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	303	first strand
Strand 2	B	306	309	anti-parallel
Strand 3	B	312	314	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	321	first strand
Strand 2	B	352	355	parallel
Strand 3	B	374	378	parallel
Strand 4	B	413	420	parallel
Strand 5	B	447	453	parallel
Strand 6	B	475	478	parallel
Strand 7	B	504	508	parallel
Strand 8	B	547	550	parallel
Strand 9	B	316	321	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	458	first strand
Strand 2	B	461	463	anti-parallel
Strand 3	B	495	496	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	558	559	first strand
Strand 2	B	572	573	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	200	205	anti-parallel
Strand 3	C	124	129	anti-parallel
Strand 4	C	155	158	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	91	first strand
Strand 2	C	41	47	anti-parallel
Strand 3	C	108	115	anti-parallel
Strand 4	C	168	175	anti-parallel
Strand 5	C	135	140	anti-parallel
Strand 6	C	143	149	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	133	first strand
Strand 2	C	195	196	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	217	first strand
Strand 2	C	224	232	anti-parallel
Strand 3	C	260	266	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	254	first strand
Strand 2	C	239	244	anti-parallel
Strand 3	C	280	285	anti-parallel
Strand 4	C	290	295	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	303	first strand
Strand 2	C	306	309	anti-parallel
Strand 3	C	312	314	anti-parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	321	first strand
Strand 2	C	352	355	parallel
Strand 3	C	374	378	parallel
Strand 4	C	413	420	parallel
Strand 5	C	447	453	parallel
Strand 6	C	475	478	parallel
Strand 7	C	504	508	parallel
Strand 8	C	547	550	parallel
Strand 9	C	316	321	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	458	first strand
Strand 2	C	461	463	anti-parallel
Strand 3	C	495	496	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	558	559	first strand
Strand 2	C	572	573	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	38	first strand
Strand 2	D	200	205	anti-parallel
Strand 3	D	124	129	anti-parallel
Strand 4	D	155	158	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	91	first strand
Strand 2	D	41	47	anti-parallel
Strand 3	D	108	115	anti-parallel
Strand 4	D	168	175	anti-parallel
Strand 5	D	135	140	anti-parallel
Strand 6	D	143	149	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	133	first strand
Strand 2	D	195	196	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	217	first strand
Strand 2	D	224	232	anti-parallel
Strand 3	D	260	266	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	254	first strand
Strand 2	D	239	244	anti-parallel
Strand 3	D	280	285	anti-parallel
Strand 4	D	290	295	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	300	303	first strand
Strand 2	D	306	309	anti-parallel
Strand 3	D	312	314	anti-parallel

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There are 9 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	321	first strand
Strand 2	D	352	355	parallel
Strand 3	D	374	378	parallel
Strand 4	D	413	420	parallel
Strand 5	D	447	453	parallel
Strand 6	D	475	478	parallel
Strand 7	D	504	508	parallel
Strand 8	D	547	550	parallel
Strand 9	D	316	321	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	458	first strand
Strand 2	D	461	463	anti-parallel
Strand 3	D	495	496	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	558	559	first strand
Strand 2	D	572	573	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D6W

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D6W