Analysis of interatomic Contacts of Structural Units in PDB entry:
6D6Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D6Y entry

There is 1 chain in PDB entry 6D6Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 506HIS 1016
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 6D6Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
513 515Right-handed 310
Helix 2
AA2
A
516 522Right-handed alpha
Helix 3
AA3
A
531 542Right-handed alpha
Helix 4
AA4
A
583 601Right-handed alpha
Helix 5
AA5
A
611 620Right-handed alpha
Helix 6
AA6
A
630 642Right-handed alpha
Helix 7
AA7
A
643 648Right-handed 310
Helix 8
AA8
A
649 654Right-handed alpha
Helix 9
AA9
A
654 675Right-handed alpha
Helix 10
AB1
A
686 695Right-handed alpha
Helix 11
AB2
A
697 699Right-handed 310
Helix 12
AB3
A
700 714Right-handed alpha
Helix 13
AB4
A
728 732Right-handed 310
Helix 14
AB5
A
737 753Right-handed alpha
Helix 15
AB6
A
756 769Right-handed alpha
Helix 16
AB7
A
769 775Right-handed alpha
Helix 17
AB8
A
779 784Right-handed alpha
Helix 18
AB9
A
785 788Right-handed 310
Helix 19
AC1
A
789 795Right-handed alpha
Helix 20
AC2
A
800 822Right-handed alpha
Helix 21
AC3
A
841 852Right-handed alpha
Helix 22
AC4
A
853 855Right-handed 310
Helix 23
AC5
A
866 878Right-handed alpha
Helix 24
AC6
A
894 898Right-handed 310
Helix 25
AC7
A
918 929Right-handed alpha
Helix 26
AC8
A
945 953Right-handed alpha
Helix 27
AC9
A
954 960Right-handed 310
Helix 28
AD1
A
963 967Right-handed 310
Helix 29
AD2
A
975 986Right-handed alpha
Helix 30
AD3
A
996 1000Right-handed 310
Helix 31
AD4
A
1002 1006Right-handed 310
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There are 4 sheets in PDB entry 6D6Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 511first strand
Strand 2
A
546 551anti-parallel
Strand 3
A
554 564anti-parallel
Strand 4
A
569 577anti-parallel
Strand 5
A
524 525anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 511first strand
Strand 2
A
546 551anti-parallel
Strand 3
A
554 564anti-parallel
Strand 4
A
569 577anti-parallel
Strand 5
A
607 609parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
684 685first strand
Strand 2
A
724 726anti-parallel
Strand 3
A
717 719anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
883 887first strand
Strand 2
A
858 864parallel
Strand 3
A
831 836parallel
Strand 4
A
904 910parallel
Strand 5
A
930 941parallel
Strand 6
A
1008 1015anti-parallel
Strand 7
A
988 994anti-parallel
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