Analysis of interatomic Contacts of Structural Units in PDB entry:
6D6Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D6Z entry

There is 1 chain in PDB entry 6D6Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2VAL 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6D6Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 48Right-handed alpha
Helix 2
AA2
A
54 59Right-handed alpha
Helix 3
AA3
A
77 92Right-handed alpha
Helix 4
AA4
A
95 97Right-handed 310
Helix 5
AA5
A
112 121Right-handed alpha
Helix 6
AA6
A
121 128Right-handed alpha
Helix 7
AA7
A
154 158Right-handed alpha
Helix 8
AA8
A
178 183Right-handed 310
Helix 9
AA9
A
189 198Right-handed alpha
Helix 10
AB1
A
199 202Right-handed 310
Helix 11
AB2
A
213 226Right-handed alpha
Helix 12
AB3
A
251 265Right-handed alpha
Helix 13
AB4
A
288 300Right-handed alpha
Helix 14
AB5
A
321 330Right-handed alpha
Helix 15
AB6
A
353 359Right-handed alpha
Helix 16
AB7
A
360 362Right-handed 310
Helix 17
AB8
A
371 378Right-handed alpha
Helix 18
AB9
A
385 396Right-handed alpha
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There are 6 sheets in PDB entry 6D6Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 10first strand
Strand 2
A
13 19anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
402 405parallel
Strand 3
A
273 279parallel
Strand 4
A
303 312parallel
Strand 5
A
363 367parallel
Strand 6
A
381 382parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
A
99 103parallel
Strand 3
A
65 69parallel
Strand 4
A
161 168parallel
Strand 5
A
230 236parallel
Strand 6
A
242 248anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
151 153anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
175 176anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 268first strand
Strand 2
A
412 414parallel
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