Analysis of interatomic Contacts of Structural Units in PDB entry:
6D71


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D71 entry

There are 2 chains in PDB entry 6D71 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4CYS 175
B
 ASP 4PRO 172
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6D71. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 27Right-handed alpha
Helix 2
AA2
A
43 47Right-handed 310
Helix 3
AA3
A
64 75Right-handed alpha
Helix 4
AA4
A
86 96Right-handed alpha
Helix 5
AA5
A
96 102Right-handed alpha
Helix 6
AA6
A
119 123Right-handed 310
Helix 7
AA7
A
127 138Right-handed alpha
Helix 8
AA8
A
154 168Right-handed alpha
Helix 9
AA9
B
16 27Right-handed alpha
Helix 10
AB1
B
43 47Right-handed 310
Helix 11
AB2
B
64 75Right-handed alpha
Helix 12
AB3
B
86 96Right-handed alpha
Helix 13
AB4
B
96 103Right-handed alpha
Helix 14
AB5
B
119 123Right-handed 310
Helix 15
AB6
B
127 138Right-handed alpha
Helix 16
AB7
B
154 168Right-handed alpha
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There are 2 sheets in PDB entry 6D71. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
53 57anti-parallel
Strand 3
A
5 11parallel
Strand 4
A
77 83parallel
Strand 5
A
113 118parallel
Strand 6
A
141 146parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 42first strand
Strand 2
B
53 57anti-parallel
Strand 3
B
5 11parallel
Strand 4
B
77 83parallel
Strand 5
B
113 118parallel
Strand 6
B
141 146parallel
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