Analysis of interatomic Contacts of Structural Units in PDB entry:
6D79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D79 entry

There are 2 chains in PDB entry 6D79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 8GLU 240
B
 GLY 8GLU 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6D79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 19Right-handed alpha
Helix 2
AA2
A
24 53Right-handed alpha
Helix 3
AA3
A
75 112Right-handed alpha
Helix 4
AA4
A
121 127Right-handed 310
Helix 5
AA5
A
128 154Right-handed alpha
Helix 6
AA6
A
158 161Right-handed 310
Helix 7
AA7
A
162 180Right-handed alpha
Helix 8
AA8
A
180 187Right-handed alpha
Helix 9
AA9
A
190 201Right-handed alpha
Helix 10
AB1
A
201 217Right-handed alpha
Helix 11
AB2
A
221 239Right-handed alpha
Helix 12
AB3
B
9 20Right-handed alpha
Helix 13
AB4
B
24 50Right-handed alpha
Helix 14
AB5
B
73 112Right-handed alpha
Helix 15
AB6
B
121 123Right-handed 310
Helix 16
AB7
B
124 154Right-handed alpha
Helix 17
AB8
B
159 161Right-handed 310
Helix 18
AB9
B
162 187Right-handed alpha
Helix 19
AC1
B
190 201Right-handed alpha
Helix 20
AC2
B
201 218Right-handed alpha
Helix 21
AC3
B
221 239Right-handed alpha
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There are no sheets in PDB entry 6D79
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il