Analysis of interatomic Contacts of Structural Units in PDB entry:
6D7A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D7A entry

There are 2 chains in PDB entry 6D7A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 820	VAL 1085
B	VAL 821	VAL 1085

There are 8 helices in PDB entry 6D7A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	824	832	Right-handed alpha
Helix 2	AA2	A	949	954	Right-handed 310
Helix 3	AA3	A	990	992	Right-handed 310
Helix 4	AA4	A	1038	1042	Right-handed 310
Helix 5	AA5	B	824	832	Right-handed alpha
Helix 6	AA6	B	949	954	Right-handed 310
Helix 7	AA7	B	990	992	Right-handed 310
Helix 8	AA8	B	1038	1042	Right-handed 310

There are 12 sheets in PDB entry 6D7A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	833	839	first strand
Strand 2	A	895	903	anti-parallel
Strand 3	A	852	861	anti-parallel
Strand 4	A	872	875	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	844	846	first strand
Strand 2	A	882	884	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	910	916	first strand
Strand 2	A	976	985	anti-parallel
Strand 3	A	934	944	anti-parallel
Strand 4	A	955	958	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	926	929	first strand
Strand 2	A	965	968	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	994	1005	first strand
Strand 2	A	1073	1084	anti-parallel
Strand 3	A	1025	1036	anti-parallel
Strand 4	A	1046	1048	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1016	1020	first strand
Strand 2	A	1055	1059	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	833	839	first strand
Strand 2	B	895	903	anti-parallel
Strand 3	B	852	861	anti-parallel
Strand 4	B	872	875	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	844	846	first strand
Strand 2	B	882	884	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	910	916	first strand
Strand 2	B	976	985	anti-parallel
Strand 3	B	934	944	anti-parallel
Strand 4	B	955	958	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	926	929	first strand
Strand 2	B	965	968	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	994	1005	first strand
Strand 2	B	1073	1084	anti-parallel
Strand 3	B	1025	1036	anti-parallel
Strand 4	B	1046	1048	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1016	1020	first strand
Strand 2	B	1055	1059	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D7A

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D7A