Analysis of interatomic Contacts of Structural Units in PDB entry:
6D7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D7F entry

There are 6 chains in PDB entry 6D7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 25LYS 603
B
ALA 25LYS 603
C
ALA 25LYS 603
D
ALA 25LYS 603
E
ALA 25LYS 603
F
ALA 25LYS 603
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 6D7F. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
30 34Right-handed 310
Helix 2
AA2
A
65 69Right-handed 310
Helix 3
AA3
A
82 86Right-handed 310
Helix 4
AA4
A
99 103Right-handed 310
Helix 5
AA5
A
245 248Right-handed 310
Helix 6
AA6
A
334 349Right-handed alpha
Helix 7
AA7
A
361 372Right-handed alpha
Helix 8
AA8
A
389 408Right-handed alpha
Helix 9
AA9
A
425 443Right-handed alpha
Helix 10
AB1
A
466 472Right-handed 310
Helix 11
AB2
A
487 494Right-handed 310
Helix 12
AB3
A
526 543Right-handed alpha
Helix 13
AB4
A
585 602Right-handed alpha
Helix 14
AB5
B
30 34Right-handed 310
Helix 15
AB6
B
99 103Right-handed 310
Helix 16
AB7
B
245 248Right-handed 310
Helix 17
AB8
B
334 349Right-handed alpha
Helix 18
AB9
B
361 372Right-handed alpha
Helix 19
AC1
B
390 408Right-handed alpha
Helix 20
AC2
B
425 441Right-handed alpha
Helix 21
AC3
B
466 471Right-handed 310
Helix 22
AC4
B
488 492Right-handed 310
Helix 23
AC5
B
526 542Right-handed alpha
Helix 24
AC6
B
585 588Right-handed 310
Helix 25
AC7
B
589 602Right-handed alpha
Helix 26
AC8
C
30 34Right-handed 310
Helix 27
AC9
C
65 69Right-handed 310
Helix 28
AD1
C
82 86Right-handed 310
Helix 29
AD2
C
95 103Right-handed 310
Helix 30
AD3
C
245 248Right-handed 310
Helix 31
AD4
C
334 349Right-handed alpha
Helix 32
AD5
C
361 372Right-handed alpha
Helix 33
AD6
C
389 408Right-handed alpha
Helix 34
AD7
C
425 443Right-handed alpha
Helix 35
AD8
C
466 471Right-handed 310
Helix 36
AD9
C
487 494Right-handed 310
Helix 37
AE1
C
526 543Right-handed alpha
Helix 38
AE2
C
585 602Right-handed alpha
Helix 39
AE3
D
30 34Right-handed 310
Helix 40
AE4
D
65 69Right-handed 310
Helix 41
AE5
D
82 86Right-handed 310
Helix 42
AE6
D
99 103Right-handed 310
Helix 43
AE7
D
245 248Right-handed 310
Helix 44
AE8
D
334 349Right-handed alpha
Helix 45
AE9
D
361 372Right-handed alpha
Helix 46
AF1
D
389 408Right-handed alpha
Helix 47
AF2
D
425 443Right-handed alpha
Helix 48
AF3
D
466 472Right-handed 310
Helix 49
AF4
D
487 494Right-handed 310
Helix 50
AF5
D
526 544Right-handed alpha
Helix 51
AF6
D
585 603Right-handed alpha
Helix 52
AF7
E
30 34Right-handed 310
Helix 53
AF8
E
65 69Right-handed 310
Helix 54
AF9
E
82 86Right-handed 310
Helix 55
AG1
E
95 103Right-handed 310
Helix 56
AG2
E
245 248Right-handed 310
Helix 57
AG3
E
334 348Right-handed alpha
Helix 58
AG4
E
361 372Right-handed alpha
Helix 59
AG5
E
389 408Right-handed alpha
Helix 60
AG6
E
425 443Right-handed alpha
Helix 61
AG7
E
466 472Right-handed 310
Helix 62
AG8
E
487 492Right-handed 310
Helix 63
AG9
E
526 543Right-handed alpha
Helix 64
AH1
E
586 602Right-handed alpha
Helix 65
AH2
F
30 34Right-handed 310
Helix 66
AH3
F
65 69Right-handed 310
Helix 67
AH4
F
82 86Right-handed 310
Helix 68
AH5
F
99 103Right-handed 310
Helix 69
AH6
F
245 248Right-handed 310
Helix 70
AH7
F
334 349Right-handed alpha
Helix 71
AH8
F
361 372Right-handed alpha
Helix 72
AH9
F
389 408Right-handed alpha
Helix 73
AI1
F
425 443Right-handed alpha
Helix 74
AI2
F
466 472Right-handed 310
Helix 75
AI3
F
487 494Right-handed 310
Helix 76
AI4
F
526 542Right-handed alpha
Helix 77
AI5
F
585 602Right-handed alpha
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There are 53 sheets in PDB entry 6D7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
35 38first strand
Strand 2
A
200 205anti-parallel
Strand 3
A
124 129anti-parallel
Strand 4
A
155 158anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
88 91first strand
Strand 2
A
41 47anti-parallel
Strand 3
A
108 115anti-parallel
Strand 4
A
168 175anti-parallel
Strand 5
A
135 140anti-parallel
Strand 6
A
143 149anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
209 218first strand
Strand 2
A
221 232anti-parallel
Strand 3
A
260 266anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
249 254first strand
Strand 2
A
239 244anti-parallel
Strand 3
A
280 285anti-parallel
Strand 4
A
290 295anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
300 303first strand
Strand 2
A
306 309anti-parallel
Strand 3
A
312 313anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
447 449first strand
Strand 2
A
413 417parallel
Strand 3
A
374 378parallel
Strand 4
A
352 356parallel
Strand 5
A
316 322parallel
Strand 6
A
547 550parallel
Strand 7
A
504 508parallel
Strand 8
A
475 478parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
454 458first strand
Strand 2
A
461 464anti-parallel
Strand 3
A
495 496parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
558 559first strand
Strand 2
A
572 573anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
88 91first strand
Strand 2
B
41 48anti-parallel
Strand 3
B
108 115anti-parallel
Strand 4
B
168 175anti-parallel
Strand 5
B
135 138anti-parallel
Strand 6
B
148 149anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
123 129first strand
Strand 2
B
200 206anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
208 218first strand
Strand 2
B
221 233anti-parallel
Strand 3
B
261 262anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
208 218first strand
Strand 2
B
221 233anti-parallel
Strand 3
B
265 266anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
249 254first strand
Strand 2
B
239 244anti-parallel
Strand 3
B
281 285anti-parallel
Strand 4
B
290 294anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
300 303first strand
Strand 2
B
306 309anti-parallel
Strand 3
B
312 314anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
320 321first strand
Strand 2
B
352 355parallel
Strand 3
B
374 378parallel
Strand 4
B
413 417parallel
Strand 5
B
447 449parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
454 458first strand
Strand 2
B
461 464anti-parallel
Strand 3
B
495 496parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
475 478first strand
Strand 2
B
504 508parallel
Strand 3
B
547 550parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
558 559first strand
Strand 2
B
572 573anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
35 38first strand
Strand 2
C
200 205anti-parallel
Strand 3
C
124 129anti-parallel
Strand 4
C
155 158anti-parallel
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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
88 91first strand
Strand 2
C
41 48anti-parallel
Strand 3
C
108 115anti-parallel
Strand 4
C
168 175anti-parallel
Strand 5
C
135 140anti-parallel
Strand 6
C
143 149anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
209 217first strand
Strand 2
C
224 232anti-parallel
Strand 3
C
260 266anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
249 254first strand
Strand 2
C
239 244anti-parallel
Strand 3
C
280 285anti-parallel
Strand 4
C
290 295anti-parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
300 303first strand
Strand 2
C
306 309anti-parallel
Strand 3
C
312 314anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
316 317first strand
Strand 2
C
547 550parallel
Strand 3
C
504 508parallel
Strand 4
C
475 478parallel
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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
320 321first strand
Strand 2
C
352 355parallel
Strand 3
C
374 378parallel
Strand 4
C
413 417parallel
Strand 5
C
447 449parallel
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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
454 458first strand
Strand 2
C
461 464anti-parallel
Strand 3
C
495 496parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
558 559first strand
Strand 2
C
572 573anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
35 38first strand
Strand 2
D
200 205anti-parallel
Strand 3
D
124 129anti-parallel
Strand 4
D
155 158anti-parallel
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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
87 91first strand
Strand 2
D
41 48anti-parallel
Strand 3
D
108 115anti-parallel
Strand 4
D
168 175anti-parallel
Strand 5
D
135 140anti-parallel
Strand 6
D
143 149anti-parallel
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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
209 217first strand
Strand 2
D
224 232anti-parallel
Strand 3
D
260 266anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
249 254first strand
Strand 2
D
239 244anti-parallel
Strand 3
D
280 285anti-parallel
Strand 4
D
290 295anti-parallel
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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
300 303first strand
Strand 2
D
306 309anti-parallel
Strand 3
D
312 314anti-parallel
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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
316 317first strand
Strand 2
D
547 550parallel
Strand 3
D
504 508parallel
Strand 4
D
475 478parallel
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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
320 321first strand
Strand 2
D
352 355parallel
Strand 3
D
374 378parallel
Strand 4
D
413 417parallel
Strand 5
D
447 449parallel
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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
454 458first strand
Strand 2
D
461 464anti-parallel
Strand 3
D
495 496parallel
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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
558 559first strand
Strand 2
D
572 573anti-parallel
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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
35 38first strand
Strand 2
E
200 205anti-parallel
Strand 3
E
124 129anti-parallel
Strand 4
E
155 158anti-parallel
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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
87 91first strand
Strand 2
E
41 47anti-parallel
Strand 3
E
108 115anti-parallel
Strand 4
E
168 175anti-parallel
Strand 5
E
135 140anti-parallel
Strand 6
E
143 149anti-parallel
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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
209 217first strand
Strand 2
E
224 232anti-parallel
Strand 3
E
260 266anti-parallel
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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
249 254first strand
Strand 2
E
239 244anti-parallel
Strand 3
E
280 285anti-parallel
Strand 4
E
290 295anti-parallel
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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
302 303first strand
Strand 2
E
306 309anti-parallel
Strand 3
E
312 313anti-parallel
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There are 8 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
447 449first strand
Strand 2
E
413 417parallel
Strand 3
E
374 378parallel
Strand 4
E
352 356parallel
Strand 5
E
316 322parallel
Strand 6
E
547 550parallel
Strand 7
E
504 508parallel
Strand 8
E
475 478parallel
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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
454 458first strand
Strand 2
E
461 464anti-parallel
Strand 3
E
495 496parallel
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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
558 559first strand
Strand 2
E
572 573anti-parallel
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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
35 38first strand
Strand 2
F
200 205anti-parallel
Strand 3
F
124 129anti-parallel
Strand 4
F
155 158anti-parallel
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There are 6 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
87 91first strand
Strand 2
F
41 48anti-parallel
Strand 3
F
108 115anti-parallel
Strand 4
F
168 175anti-parallel
Strand 5
F
135 140anti-parallel
Strand 6
F
143 149anti-parallel
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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
209 218first strand
Strand 2
F
221 232anti-parallel
Strand 3
F
260 266anti-parallel
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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
249 254first strand
Strand 2
F
239 244anti-parallel
Strand 3
F
280 285anti-parallel
Strand 4
F
290 295anti-parallel
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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
300 303first strand
Strand 2
F
306 309anti-parallel
Strand 3
F
312 314anti-parallel
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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
316 317first strand
Strand 2
F
547 550parallel
Strand 3
F
504 508parallel
Strand 4
F
475 478parallel
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There are 5 strands in AF6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
320 322first strand
Strand 2
F
352 356parallel
Strand 3
F
374 378parallel
Strand 4
F
413 417parallel
Strand 5
F
447 449parallel
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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
454 458first strand
Strand 2
F
461 464anti-parallel
Strand 3
F
495 496parallel
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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
558 559first strand
Strand 2
F
572 573anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il