Analysis of interatomic Contacts of Structural Units in PDB entry:
6D7G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D7G entry

There are 3 chains in PDB entry 6D7G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1HIS 1276
D
 ALA 1PHE 201
E
 GLY 6ILE 226
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 6D7G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1049 1053Right-handed 310
Helix 2
AA2
A
1056 1085Right-handed alpha
Helix 3
AA3
A
1138 1151Right-handed alpha
Helix 4
AA4
A
1151 1162Right-handed alpha
Helix 5
AA5
A
1162 1175Right-handed alpha
Helix 6
AA6
A
1175 1180Right-handed alpha
Helix 7
AA7
A
1225 1228Right-handed 310
Helix 8
AA8
A
1253 1255Right-handed 310
Helix 9
AA9
D
82 86Right-handed 310
Helix 10
AB1
D
181 185Right-handed 310
Helix 11
AB2
D
199 201Right-handed 310
Helix 12
AB3
E
86 90Right-handed 310
Helix 13
AB4
E
136 144Right-handed alpha
Back to top of page

There are 20 sheets in PDB entry 6D7G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 111first strand
Strand 2
A
121 130anti-parallel
Strand 3
A
162 170anti-parallel
Strand 4
A
150 151anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 111first strand
Strand 2
A
121 130anti-parallel
Strand 3
A
162 170anti-parallel
Strand 4
A
155 156anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
136 141anti-parallel
Strand 3
A
178 183anti-parallel
Strand 4
A
191 194anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1046 1047first strand
Strand 2
A
1031 1037anti-parallel
Strand 3
A
1021 1028anti-parallel
Strand 4
A
1002 1012anti-parallel
Strand 5
A
1094 1104anti-parallel
Strand 6
A
1109 1118anti-parallel
Strand 7
A
1121 1126anti-parallel
Strand 8
A
1133 1135anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1186 1193first strand
Strand 2
A
1198 1208anti-parallel
Strand 3
A
1241 1250anti-parallel
Strand 4
A
1229 1230anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1186 1193first strand
Strand 2
A
1198 1208anti-parallel
Strand 3
A
1241 1250anti-parallel
Strand 4
A
1234 1235anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1222 1223first strand
Strand 2
A
1214 1219anti-parallel
Strand 3
A
1257 1262anti-parallel
Strand 4
A
1270 1272anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 5first strand
Strand 2
D
24 26anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
109 114parallel
Strand 3
D
87 93anti-parallel
Strand 4
D
33 39anti-parallel
Strand 5
D
45 52anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
109 114parallel
Strand 3
D
87 93anti-parallel
Strand 4
D
104 105anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 21first strand
Strand 2
D
73 78anti-parallel
Strand 3
D
63 68anti-parallel
Strand 4
D
59 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
124 130first strand
Strand 2
D
133 141anti-parallel
Strand 3
D
171 178anti-parallel
Strand 4
D
157 158anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
124 130first strand
Strand 2
D
133 141anti-parallel
Strand 3
D
171 178anti-parallel
Strand 4
D
162 165anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
147 150first strand
Strand 2
D
187 191anti-parallel
Strand 3
D
194 197anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 14first strand
Strand 2
E
111 116parallel
Strand 3
E
91 98anti-parallel
Strand 4
E
32 38anti-parallel
Strand 5
E
45 51anti-parallel
Strand 6
E
56 59anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 14first strand
Strand 2
E
111 116parallel
Strand 3
E
91 98anti-parallel
Strand 4
E
105 107anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
19 23first strand
Strand 2
E
78 82anti-parallel
Strand 3
E
68 72anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
129 133first strand
Strand 2
E
146 155anti-parallel
Strand 3
E
186 195anti-parallel
Strand 4
E
176 177anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
129 133first strand
Strand 2
E
146 155anti-parallel
Strand 3
E
186 195anti-parallel
Strand 4
E
181 183anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
161 165first strand
Strand 2
E
205 209anti-parallel
Strand 3
E
219 222anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il