Analysis of interatomic Contacts of Structural Units in PDB entry:
6D7J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D7J entry

There are 4 chains in PDB entry 6D7J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 22	PRO 829
B	ASN 22	PRO 829
C	SER 21	PRO 829
D	SER 21	SER 828

There are 60 helices in PDB entry 6D7J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	52	Right-handed alpha
Helix 2	AA2	A	58	62	Right-handed 310
Helix 3	AA3	A	142	151	Right-handed alpha
Helix 4	AA4	A	152	159	Right-handed 310
Helix 5	AA5	A	344	358	Right-handed alpha
Helix 6	AA6	A	371	382	Right-handed alpha
Helix 7	AA7	A	398	417	Right-handed alpha
Helix 8	AA8	A	441	460	Right-handed alpha
Helix 9	AA9	A	470	474	Right-handed 310
Helix 10	AB1	A	492	494	Right-handed 310
Helix 11	AB2	A	495	505	Right-handed alpha
Helix 12	AB3	A	525	529	Right-handed 310
Helix 13	AB4	A	564	580	Right-handed alpha
Helix 14	AB5	A	622	633	Right-handed alpha
Helix 15	AB6	A	687	690	Right-handed 310
Helix 16	AB7	B	47	52	Right-handed alpha
Helix 17	AB8	B	58	62	Right-handed 310
Helix 18	AB9	B	142	151	Right-handed alpha
Helix 19	AC1	B	152	159	Right-handed 310
Helix 20	AC2	B	344	358	Right-handed alpha
Helix 21	AC3	B	371	382	Right-handed alpha
Helix 22	AC4	B	398	417	Right-handed alpha
Helix 23	AC5	B	441	460	Right-handed alpha
Helix 24	AC6	B	470	474	Right-handed 310
Helix 25	AC7	B	492	494	Right-handed 310
Helix 26	AC8	B	495	505	Right-handed alpha
Helix 27	AC9	B	525	529	Right-handed 310
Helix 28	AD1	B	564	580	Right-handed alpha
Helix 29	AD2	B	622	633	Right-handed alpha
Helix 30	AD3	B	687	690	Right-handed 310
Helix 31	AD4	C	47	52	Right-handed alpha
Helix 32	AD5	C	58	62	Right-handed 310
Helix 33	AD6	C	142	151	Right-handed alpha
Helix 34	AD7	C	152	159	Right-handed 310
Helix 35	AD8	C	344	357	Right-handed alpha
Helix 36	AD9	C	371	382	Right-handed alpha
Helix 37	AE1	C	398	417	Right-handed alpha
Helix 38	AE2	C	441	460	Right-handed alpha
Helix 39	AE3	C	470	474	Right-handed 310
Helix 40	AE4	C	492	494	Right-handed 310
Helix 41	AE5	C	495	505	Right-handed alpha
Helix 42	AE6	C	525	529	Right-handed 310
Helix 43	AE7	C	564	580	Right-handed alpha
Helix 44	AE8	C	622	633	Right-handed alpha
Helix 45	AE9	C	687	690	Right-handed 310
Helix 46	AF1	D	47	52	Right-handed alpha
Helix 47	AF2	D	58	62	Right-handed 310
Helix 48	AF3	D	142	151	Right-handed alpha
Helix 49	AF4	D	152	159	Right-handed 310
Helix 50	AF5	D	344	358	Right-handed alpha
Helix 51	AF6	D	371	382	Right-handed alpha
Helix 52	AF7	D	398	417	Right-handed alpha
Helix 53	AF8	D	441	460	Right-handed alpha
Helix 54	AF9	D	470	474	Right-handed 310
Helix 55	AG1	D	492	494	Right-handed 310
Helix 56	AG2	D	495	505	Right-handed alpha
Helix 57	AG3	D	525	529	Right-handed 310
Helix 58	AG4	D	564	580	Right-handed alpha
Helix 59	AG5	D	622	633	Right-handed alpha
Helix 60	AG6	D	687	690	Right-handed 310

There are 45 sheets in PDB entry 6D7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	194	199	anti-parallel
Strand 3	A	107	112	anti-parallel
Strand 4	A	138	141	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	68	first strand
Strand 2	A	37	41	anti-parallel
Strand 3	A	90	97	anti-parallel
Strand 4	A	162	169	anti-parallel
Strand 5	A	118	123	anti-parallel
Strand 6	A	126	132	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	213	first strand
Strand 2	A	219	229	anti-parallel
Strand 3	A	263	273	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	259	first strand
Strand 2	A	237	244	anti-parallel
Strand 3	A	286	294	anti-parallel
Strand 4	A	297	305	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	312	first strand
Strand 2	A	318	320	anti-parallel
Strand 3	A	323	324	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	481	first strand
Strand 2	A	464	468	parallel
Strand 3	A	422	429	parallel
Strand 4	A	384	388	parallel
Strand 5	A	362	364	parallel
Strand 6	A	327	331	parallel
Strand 7	A	587	589	parallel
Strand 8	A	512	513	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	533	535	first strand
Strand 2	A	549	551	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	596	597	first strand
Strand 2	A	609	610	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	638	640	first strand
Strand 2	A	655	662	anti-parallel
Strand 3	A	692	696	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	647	649	first strand
Strand 2	A	715	726	parallel
Strand 3	A	700	710	anti-parallel
Strand 4	A	666	671	anti-parallel
Strand 5	A	674	680	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	735	744	first strand
Strand 2	A	747	755	anti-parallel
Strand 3	A	798	804	anti-parallel
Strand 4	A	778	780	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	791	793	first strand
Strand 2	A	768	775	anti-parallel
Strand 3	A	810	815	anti-parallel
Strand 4	A	822	826	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	B	194	199	anti-parallel
Strand 3	B	107	112	anti-parallel
Strand 4	B	138	141	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	37	41	anti-parallel
Strand 3	B	90	97	anti-parallel
Strand 4	B	162	169	anti-parallel
Strand 5	B	118	123	anti-parallel
Strand 6	B	126	132	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	213	first strand
Strand 2	B	219	229	anti-parallel
Strand 3	B	263	273	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	259	first strand
Strand 2	B	237	244	anti-parallel
Strand 3	B	286	294	anti-parallel
Strand 4	B	297	305	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	312	first strand
Strand 2	B	318	320	anti-parallel
Strand 3	B	323	324	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	481	first strand
Strand 2	B	464	468	parallel
Strand 3	B	422	429	parallel
Strand 4	B	384	388	parallel
Strand 5	B	362	364	parallel
Strand 6	B	327	331	parallel
Strand 7	B	587	589	parallel
Strand 8	B	512	513	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	596	597	first strand
Strand 2	B	609	610	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	638	640	first strand
Strand 2	B	655	662	anti-parallel
Strand 3	B	692	696	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	647	649	first strand
Strand 2	B	715	726	parallel
Strand 3	B	700	710	anti-parallel
Strand 4	B	666	671	anti-parallel
Strand 5	B	674	680	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	733	744	first strand
Strand 2	B	747	756	anti-parallel
Strand 3	B	798	804	anti-parallel
Strand 4	B	778	780	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	791	793	first strand
Strand 2	B	768	775	anti-parallel
Strand 3	B	810	815	anti-parallel
Strand 4	B	822	826	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	32	first strand
Strand 2	C	194	199	anti-parallel
Strand 3	C	107	112	anti-parallel
Strand 4	C	138	141	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	68	first strand
Strand 2	C	37	41	anti-parallel
Strand 3	C	90	97	anti-parallel
Strand 4	C	162	169	anti-parallel
Strand 5	C	118	123	anti-parallel
Strand 6	C	126	132	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	213	first strand
Strand 2	C	219	229	anti-parallel
Strand 3	C	263	273	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	259	first strand
Strand 2	C	237	244	anti-parallel
Strand 3	C	286	294	anti-parallel
Strand 4	C	297	305	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	312	first strand
Strand 2	C	318	320	anti-parallel
Strand 3	C	323	324	anti-parallel

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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	479	481	first strand
Strand 2	C	464	468	parallel
Strand 3	C	422	429	parallel
Strand 4	C	384	388	parallel
Strand 5	C	362	364	parallel
Strand 6	C	327	331	parallel
Strand 7	C	587	589	parallel
Strand 8	C	512	513	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	596	597	first strand
Strand 2	C	609	610	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	638	640	first strand
Strand 2	C	655	662	anti-parallel
Strand 3	C	692	696	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	647	649	first strand
Strand 2	C	715	726	parallel
Strand 3	C	700	710	anti-parallel
Strand 4	C	666	671	anti-parallel
Strand 5	C	674	680	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	733	744	first strand
Strand 2	C	747	756	anti-parallel
Strand 3	C	798	804	anti-parallel
Strand 4	C	778	780	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	791	793	first strand
Strand 2	C	768	775	anti-parallel
Strand 3	C	810	815	anti-parallel
Strand 4	C	822	826	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	32	first strand
Strand 2	D	194	199	anti-parallel
Strand 3	D	107	112	anti-parallel
Strand 4	D	138	141	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	68	first strand
Strand 2	D	37	41	anti-parallel
Strand 3	D	90	97	anti-parallel
Strand 4	D	162	169	anti-parallel
Strand 5	D	118	123	anti-parallel
Strand 6	D	126	132	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	213	first strand
Strand 2	D	219	229	anti-parallel
Strand 3	D	263	273	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	259	first strand
Strand 2	D	237	244	anti-parallel
Strand 3	D	286	294	anti-parallel
Strand 4	D	297	305	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	310	312	first strand
Strand 2	D	318	320	anti-parallel
Strand 3	D	323	324	anti-parallel

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There are 8 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	479	481	first strand
Strand 2	D	464	468	parallel
Strand 3	D	422	429	parallel
Strand 4	D	384	388	parallel
Strand 5	D	362	364	parallel
Strand 6	D	327	331	parallel
Strand 7	D	587	589	parallel
Strand 8	D	512	513	parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	596	597	first strand
Strand 2	D	609	610	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	638	640	first strand
Strand 2	D	656	662	anti-parallel
Strand 3	D	692	695	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	647	649	first strand
Strand 2	D	715	726	parallel
Strand 3	D	700	710	anti-parallel
Strand 4	D	666	671	anti-parallel
Strand 5	D	674	680	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	735	744	first strand
Strand 2	D	747	755	anti-parallel
Strand 3	D	798	804	anti-parallel
Strand 4	D	778	779	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	791	793	first strand
Strand 2	D	768	775	anti-parallel
Strand 3	D	810	815	anti-parallel
Strand 4	D	822	826	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D7J

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D7J