Analysis of interatomic Contacts of Structural Units in PDB entry:
6D7S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D7S entry

There are 4 chains in PDB entry 6D7S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 28	ASP 638
B	SER 28	ASP 638
C	SER 28	ASP 638
D	SER 28	ASP 638

There are121 helices in PDB entry 6D7S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	47	Right-handed alpha
Helix 2	AA2	A	47	53	Right-handed alpha
Helix 3	AA3	A	57	65	Right-handed alpha
Helix 4	AA4	A	81	89	Right-handed alpha
Helix 5	AA5	A	91	102	Right-handed alpha
Helix 6	AA6	A	119	127	Right-handed alpha
Helix 7	AA7	A	131	139	Right-handed alpha
Helix 8	AA8	A	149	153	Right-handed 310
Helix 9	AA9	A	165	173	Right-handed alpha
Helix 10	AB1	A	175	184	Right-handed alpha
Helix 11	AB2	A	198	205	Right-handed alpha
Helix 12	AB3	A	209	220	Right-handed alpha
Helix 13	AB4	A	221	223	Right-handed 310
Helix 14	AB5	A	242	251	Right-handed alpha
Helix 15	AB6	A	252	264	Right-handed alpha
Helix 16	AB7	A	292	299	Right-handed alpha
Helix 17	AB8	A	301	309	Right-handed 310
Helix 18	AB9	A	310	323	Right-handed alpha
Helix 19	AC1	A	325	346	Right-handed alpha
Helix 20	AC2	A	380	403	Right-handed alpha
Helix 21	AC3	A	425	445	Right-handed alpha
Helix 22	AC4	A	450	464	Right-handed alpha
Helix 23	AC5	A	466	472	Right-handed 310
Helix 24	AC6	A	475	487	Right-handed alpha
Helix 25	AC7	A	493	512	Right-handed alpha
Helix 26	AC8	A	520	524	Right-handed 310
Helix 27	AC9	A	525	538	Right-handed alpha
Helix 28	AD1	A	552	567	Right-handed alpha
Helix 29	AD2	A	568	587	Right-handed alpha
Helix 30	AD3	A	588	606	Right-handed alpha
Helix 31	AD4	B	29	47	Right-handed alpha
Helix 32	AD5	B	47	53	Right-handed alpha
Helix 33	AD6	B	57	65	Right-handed alpha
Helix 34	AD7	B	81	89	Right-handed alpha
Helix 35	AD8	B	91	102	Right-handed alpha
Helix 36	AD9	B	119	127	Right-handed alpha
Helix 37	AE1	B	131	139	Right-handed alpha
Helix 38	AE2	B	149	153	Right-handed 310
Helix 39	AE3	B	165	173	Right-handed alpha
Helix 40	AE4	B	175	184	Right-handed alpha
Helix 41	AE5	B	198	205	Right-handed alpha
Helix 42	AE6	B	209	220	Right-handed alpha
Helix 43	AE7	B	221	223	Right-handed 310
Helix 44	AE8	B	242	251	Right-handed alpha
Helix 45	AE9	B	252	264	Right-handed alpha
Helix 46	AF1	B	292	299	Right-handed alpha
Helix 47	AF2	B	301	309	Right-handed 310
Helix 48	AF3	B	310	323	Right-handed alpha
Helix 49	AF4	B	325	342	Right-handed alpha
Helix 50	AF5	B	345	346	Right-handed alpha
Helix 51	AF6	B	380	403	Right-handed alpha
Helix 52	AF7	B	425	445	Right-handed alpha
Helix 53	AF8	B	450	464	Right-handed alpha
Helix 54	AF9	B	466	472	Right-handed 310
Helix 55	AG1	B	475	487	Right-handed alpha
Helix 56	AG2	B	493	512	Right-handed alpha
Helix 57	AG3	B	520	524	Right-handed 310
Helix 58	AG4	B	525	538	Right-handed alpha
Helix 59	AG5	B	552	567	Right-handed alpha
Helix 60	AG6	B	568	587	Right-handed alpha
Helix 61	AG7	B	588	606	Right-handed alpha
Helix 62	AG8	C	29	47	Right-handed alpha
Helix 63	AG9	C	47	53	Right-handed alpha
Helix 64	AH1	C	57	65	Right-handed alpha
Helix 65	AH2	C	81	89	Right-handed alpha
Helix 66	AH3	C	91	102	Right-handed alpha
Helix 67	AH4	C	119	127	Right-handed alpha
Helix 68	AH5	C	131	139	Right-handed alpha
Helix 69	AH6	C	149	153	Right-handed 310
Helix 70	AH7	C	165	173	Right-handed alpha
Helix 71	AH8	C	175	184	Right-handed alpha
Helix 72	AH9	C	198	205	Right-handed alpha
Helix 73	AI1	C	209	220	Right-handed alpha
Helix 74	AI2	C	221	223	Right-handed 310
Helix 75	AI3	C	242	251	Right-handed alpha
Helix 76	AI4	C	252	264	Right-handed alpha
Helix 77	AI5	C	292	299	Right-handed alpha
Helix 78	AI6	C	301	309	Right-handed 310
Helix 79	AI7	C	310	323	Right-handed alpha
Helix 80	AI8	C	325	346	Right-handed alpha
Helix 81	AI9	C	380	403	Right-handed alpha
Helix 82	AJ1	C	425	445	Right-handed alpha
Helix 83	AJ2	C	450	464	Right-handed alpha
Helix 84	AJ3	C	466	472	Right-handed 310
Helix 85	AJ4	C	475	487	Right-handed alpha
Helix 86	AJ5	C	493	512	Right-handed alpha
Helix 87	AJ6	C	520	524	Right-handed 310
Helix 88	AJ7	C	525	538	Right-handed alpha
Helix 89	AJ8	C	552	567	Right-handed alpha
Helix 90	AJ9	C	568	587	Right-handed alpha
Helix 91	AK1	C	588	606	Right-handed alpha
Helix 92	AK2	D	29	47	Right-handed alpha
Helix 93	AK3	D	47	53	Right-handed alpha
Helix 94	AK4	D	57	65	Right-handed alpha
Helix 95	AK5	D	81	89	Right-handed alpha
Helix 96	AK6	D	91	102	Right-handed alpha
Helix 97	AK7	D	119	127	Right-handed alpha
Helix 98	AK8	D	131	139	Right-handed alpha
Helix 99	AK9	D	149	153	Right-handed 310
Helix 100	AL1	D	165	173	Right-handed alpha
Helix 101	AL2	D	175	184	Right-handed alpha
Helix 102	AL3	D	198	205	Right-handed alpha
Helix 103	AL4	D	209	220	Right-handed alpha
Helix 104	AL5	D	221	223	Right-handed 310
Helix 105	AL6	D	242	251	Right-handed alpha
Helix 106	AL7	D	252	264	Right-handed alpha
Helix 107	AL8	D	292	299	Right-handed alpha
Helix 108	AL9	D	301	309	Right-handed 310
Helix 109	AM1	D	310	323	Right-handed alpha
Helix 110	AM2	D	325	346	Right-handed alpha
Helix 111	AM3	D	380	403	Right-handed alpha
Helix 112	AM4	D	425	445	Right-handed alpha
Helix 113	AM5	D	450	464	Right-handed alpha
Helix 114	AM6	D	466	472	Right-handed 310
Helix 115	AM7	D	475	487	Right-handed alpha
Helix 116	AM8	D	493	512	Right-handed alpha
Helix 117	AM9	D	520	524	Right-handed 310
Helix 118	AN1	D	525	538	Right-handed alpha
Helix 119	AN2	D	552	567	Right-handed alpha
Helix 120	AN3	D	568	587	Right-handed alpha
Helix 121	AN4	D	588	606	Right-handed alpha

There are 8 sheets in PDB entry 6D7S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	270	first strand
Strand 2	A	273	274	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	278	first strand
Strand 2	A	631	633	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	270	first strand
Strand 2	B	273	274	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	631	633	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	270	first strand
Strand 2	C	273	274	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	278	first strand
Strand 2	C	631	633	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	270	first strand
Strand 2	D	273	274	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	276	278	first strand
Strand 2	D	631	633	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D7S

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D7S