Analysis of interatomic Contacts of Structural Units in PDB entry:
6D7T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D7T entry

There are 4 chains in PDB entry 6D7T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 28ASP 638
B
 SER 28ASP 638
C
 SER 28ASP 638
D
 SER 28ASP 638
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are124 helices in PDB entry 6D7T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 47Right-handed alpha
Helix 2
AA2
A
47 55Right-handed alpha
Helix 3
AA3
A
57 66Right-handed alpha
Helix 4
AA4
A
81 89Right-handed alpha
Helix 5
AA5
A
102 107Right-handed 310
Helix 6
AA6
A
119 125Right-handed alpha
Helix 7
AA7
A
131 138Right-handed alpha
Helix 8
AA8
A
149 153Right-handed 310
Helix 9
AA9
A
165 174Right-handed alpha
Helix 10
AB1
A
175 184Right-handed alpha
Helix 11
AB2
A
198 205Right-handed alpha
Helix 12
AB3
A
208 214Right-handed alpha
Helix 13
AB4
A
214 221Right-handed alpha
Helix 14
AB5
A
242 251Right-handed alpha
Helix 15
AB6
A
252 262Right-handed alpha
Helix 16
AB7
A
291 299Right-handed alpha
Helix 17
AB8
A
303 310Right-handed 310
Helix 18
AB9
A
312 323Right-handed alpha
Helix 19
AC1
A
325 349Right-handed alpha
Helix 20
AC2
A
383 402Right-handed alpha
Helix 21
AC3
A
402 411Right-handed alpha
Helix 22
AC4
A
415 420Right-handed alpha
Helix 23
AC5
A
424 446Right-handed alpha
Helix 24
AC6
A
450 464Right-handed alpha
Helix 25
AC7
A
465 471Right-handed 310
Helix 26
AC8
A
475 487Right-handed alpha
Helix 27
AC9
A
489 512Right-handed alpha
Helix 28
AD1
A
525 538Right-handed alpha
Helix 29
AD2
A
554 567Right-handed alpha
Helix 30
AD3
A
568 582Right-handed alpha
Helix 31
AD4
A
589 608Right-handed alpha
Helix 32
AD5
B
30 47Right-handed alpha
Helix 33
AD6
B
47 55Right-handed alpha
Helix 34
AD7
B
57 66Right-handed alpha
Helix 35
AD8
B
81 89Right-handed alpha
Helix 36
AD9
B
102 107Right-handed 310
Helix 37
AE1
B
119 125Right-handed alpha
Helix 38
AE2
B
131 138Right-handed alpha
Helix 39
AE3
B
149 153Right-handed 310
Helix 40
AE4
B
165 174Right-handed alpha
Helix 41
AE5
B
175 184Right-handed alpha
Helix 42
AE6
B
198 205Right-handed alpha
Helix 43
AE7
B
208 214Right-handed alpha
Helix 44
AE8
B
214 221Right-handed alpha
Helix 45
AE9
B
242 251Right-handed alpha
Helix 46
AF1
B
252 262Right-handed alpha
Helix 47
AF2
B
291 299Right-handed alpha
Helix 48
AF3
B
303 310Right-handed 310
Helix 49
AF4
B
312 323Right-handed alpha
Helix 50
AF5
B
325 349Right-handed alpha
Helix 51
AF6
B
383 402Right-handed alpha
Helix 52
AF7
B
402 411Right-handed alpha
Helix 53
AF8
B
415 420Right-handed alpha
Helix 54
AF9
B
424 446Right-handed alpha
Helix 55
AG1
B
450 464Right-handed alpha
Helix 56
AG2
B
465 471Right-handed 310
Helix 57
AG3
B
475 487Right-handed alpha
Helix 58
AG4
B
489 512Right-handed alpha
Helix 59
AG5
B
525 538Right-handed alpha
Helix 60
AG6
B
554 567Right-handed alpha
Helix 61
AG7
B
568 582Right-handed alpha
Helix 62
AG8
B
589 608Right-handed alpha
Helix 63
AG9
C
30 47Right-handed alpha
Helix 64
AH1
C
47 55Right-handed alpha
Helix 65
AH2
C
57 66Right-handed alpha
Helix 66
AH3
C
81 89Right-handed alpha
Helix 67
AH4
C
102 107Right-handed 310
Helix 68
AH5
C
119 125Right-handed alpha
Helix 69
AH6
C
131 138Right-handed alpha
Helix 70
AH7
C
149 153Right-handed 310
Helix 71
AH8
C
165 174Right-handed alpha
Helix 72
AH9
C
175 184Right-handed alpha
Helix 73
AI1
C
198 205Right-handed alpha
Helix 74
AI2
C
208 214Right-handed alpha
Helix 75
AI3
C
214 221Right-handed alpha
Helix 76
AI4
C
242 251Right-handed alpha
Helix 77
AI5
C
252 262Right-handed alpha
Helix 78
AI6
C
291 299Right-handed alpha
Helix 79
AI7
C
303 310Right-handed 310
Helix 80
AI8
C
312 323Right-handed alpha
Helix 81
AI9
C
325 349Right-handed alpha
Helix 82
AJ1
C
383 402Right-handed alpha
Helix 83
AJ2
C
402 411Right-handed alpha
Helix 84
AJ3
C
415 420Right-handed alpha
Helix 85
AJ4
C
424 446Right-handed alpha
Helix 86
AJ5
C
450 464Right-handed alpha
Helix 87
AJ6
C
465 471Right-handed 310
Helix 88
AJ7
C
475 487Right-handed alpha
Helix 89
AJ8
C
489 512Right-handed alpha
Helix 90
AJ9
C
525 538Right-handed alpha
Helix 91
AK1
C
554 567Right-handed alpha
Helix 92
AK2
C
568 582Right-handed alpha
Helix 93
AK3
C
589 608Right-handed alpha
Helix 94
AK4
D
30 47Right-handed alpha
Helix 95
AK5
D
47 55Right-handed alpha
Helix 96
AK6
D
57 66Right-handed alpha
Helix 97
AK7
D
81 89Right-handed alpha
Helix 98
AK8
D
102 107Right-handed 310
Helix 99
AK9
D
119 125Right-handed alpha
Helix 100
AL1
D
131 138Right-handed alpha
Helix 101
AL2
D
149 153Right-handed 310
Helix 102
AL3
D
165 174Right-handed alpha
Helix 103
AL4
D
175 184Right-handed alpha
Helix 104
AL5
D
198 205Right-handed alpha
Helix 105
AL6
D
208 214Right-handed alpha
Helix 106
AL7
D
214 221Right-handed alpha
Helix 107
AL8
D
242 251Right-handed alpha
Helix 108
AL9
D
252 262Right-handed alpha
Helix 109
AM1
D
291 299Right-handed alpha
Helix 110
AM2
D
303 310Right-handed 310
Helix 111
AM3
D
312 323Right-handed alpha
Helix 112
AM4
D
325 349Right-handed alpha
Helix 113
AM5
D
383 402Right-handed alpha
Helix 114
AM6
D
402 411Right-handed alpha
Helix 115
AM7
D
415 420Right-handed alpha
Helix 116
AM8
D
424 446Right-handed alpha
Helix 117
AM9
D
450 464Right-handed alpha
Helix 118
AN1
D
465 471Right-handed 310
Helix 119
AN2
D
475 487Right-handed alpha
Helix 120
AN3
D
489 512Right-handed alpha
Helix 121
AN4
D
525 538Right-handed alpha
Helix 122
AN5
D
554 567Right-handed alpha
Helix 123
AN6
D
568 582Right-handed alpha
Helix 124
AN7
D
589 608Right-handed alpha
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There are 4 sheets in PDB entry 6D7T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 270first strand
Strand 2
A
273 278anti-parallel
Strand 3
A
631 633anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 270first strand
Strand 2
B
273 278anti-parallel
Strand 3
B
631 633anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
265 270first strand
Strand 2
C
273 278anti-parallel
Strand 3
C
631 633anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
265 270first strand
Strand 2
D
273 278anti-parallel
Strand 3
D
631 633anti-parallel
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