Analysis of interatomic Contacts of Structural Units in PDB entry:
6D7U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D7U entry

There are 6 chains in PDB entry 6D7U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	GLU 316
B	GLY 1	ILE 171
C	ASP 1	GLU 316
D	GLY 1	ILE 171
E	ASP 1	GLU 316
F	GLY 1	ILE 171

There are 24 helices in PDB entry 6D7U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	62	Right-handed alpha
Helix 2	AA2	A	63	70	Right-handed 310
Helix 3	AA3	A	94	104	Right-handed alpha
Helix 4	AA4	A	178	187	Right-handed alpha
Helix 5	AA5	B	37	56	Right-handed alpha
Helix 6	AA6	B	74	123	Right-handed alpha
Helix 7	AA7	B	145	154	Right-handed alpha
Helix 8	AA8	B	159	170	Right-handed alpha
Helix 9	AA9	C	57	62	Right-handed alpha
Helix 10	AB1	C	63	70	Right-handed 310
Helix 11	AB2	C	94	104	Right-handed alpha
Helix 12	AB3	C	178	187	Right-handed alpha
Helix 13	AB4	D	37	56	Right-handed alpha
Helix 14	AB5	D	74	123	Right-handed alpha
Helix 15	AB6	D	145	154	Right-handed alpha
Helix 16	AB7	D	159	170	Right-handed alpha
Helix 17	AB8	E	57	62	Right-handed alpha
Helix 18	AB9	E	63	70	Right-handed 310
Helix 19	AC1	E	94	104	Right-handed alpha
Helix 20	AC2	E	178	187	Right-handed alpha
Helix 21	AC3	F	37	56	Right-handed alpha
Helix 22	AC4	F	74	126	Right-handed alpha
Helix 23	AC5	F	145	154	Right-handed alpha
Helix 24	AC6	F	159	170	Right-handed alpha

There are 33 sheets in PDB entry 6D7U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	36	first strand
Strand 2	B	22	27	anti-parallel
Strand 3	A	2	7	anti-parallel
Strand 4	B	137	140	anti-parallel
Strand 5	B	130	132	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	17	first strand
Strand 2	A	22	26	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	306	308	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	285	286	parallel
Strand 3	A	298	299	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	42	first strand
Strand 2	A	263	265	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	50	first strand
Strand 2	A	76	79	parallel
Strand 3	A	256	259	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	220	228	parallel
Strand 3	A	167	175	anti-parallel
Strand 4	A	247	251	anti-parallel
Strand 5	A	108	112	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	220	228	parallel
Strand 3	A	167	175	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	140	142	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	130	first strand
Strand 2	A	134	135	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	160	first strand
Strand 2	A	233	238	anti-parallel
Strand 3	A	193	196	anti-parallel
Strand 4	A	201	204	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	278	first strand
Strand 2	A	272	274	anti-parallel
Strand 3	A	293	294	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	36	first strand
Strand 2	D	22	27	anti-parallel
Strand 3	C	2	7	anti-parallel
Strand 4	D	137	140	anti-parallel
Strand 5	D	130	132	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	22	26	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	306	308	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	285	286	parallel
Strand 3	C	298	299	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	42	first strand
Strand 2	C	263	265	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	50	first strand
Strand 2	C	76	79	parallel
Strand 3	C	256	259	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	220	228	parallel
Strand 3	C	167	175	anti-parallel
Strand 4	C	247	251	anti-parallel
Strand 5	C	108	112	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	220	228	parallel
Strand 3	C	167	175	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	140	145	anti-parallel
Strand 6	C	120	121	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	130	first strand
Strand 2	C	134	135	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	160	first strand
Strand 2	C	233	238	anti-parallel
Strand 3	C	193	197	anti-parallel
Strand 4	C	201	204	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	278	first strand
Strand 2	C	272	274	anti-parallel
Strand 3	C	293	294	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	36	first strand
Strand 2	F	22	27	anti-parallel
Strand 3	E	2	7	anti-parallel
Strand 4	F	137	140	anti-parallel
Strand 5	F	130	132	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	17	first strand
Strand 2	E	22	26	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	306	308	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	34	first strand
Strand 2	E	285	286	parallel
Strand 3	E	298	299	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	42	first strand
Strand 2	E	263	265	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	50	first strand
Strand 2	E	76	79	parallel
Strand 3	E	256	259	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	92	first strand
Strand 2	E	220	228	parallel
Strand 3	E	167	175	anti-parallel
Strand 4	E	247	251	anti-parallel
Strand 5	E	108	112	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	92	first strand
Strand 2	E	220	228	parallel
Strand 3	E	167	175	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	140	145	anti-parallel
Strand 6	E	120	121	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	130	first strand
Strand 2	E	134	135	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	160	first strand
Strand 2	E	233	238	anti-parallel
Strand 3	E	193	196	anti-parallel
Strand 4	E	201	204	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	277	278	first strand
Strand 2	E	272	274	anti-parallel
Strand 3	E	293	294	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D7U

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D7U