Analysis of interatomic Contacts of Structural Units in PDB entry:
6D7Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D7Y entry

There are 2 chains in PDB entry 6D7Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3352ASP 3443
B
 MSE 1LEU 155
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6D7Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3364 3376Right-handed alpha
Helix 2
AA2
A
3376 3381Right-handed alpha
Helix 3
AA3
A
3386 3404Right-handed alpha
Helix 4
AA4
B
16 26Right-handed alpha
Helix 5
AA5
B
49 59Right-handed alpha
Helix 6
AA6
B
104 127Right-handed alpha
Helix 7
AA7
B
140 142Right-handed 310
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There are 3 sheets in PDB entry 6D7Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3358 3359first strand
Strand 2
A
3362 3363anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3409 3412first strand
Strand 2
A
3418 3423anti-parallel
Strand 3
A
3429 3433anti-parallel
Strand 4
A
3438 3442anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 36first strand
Strand 2
B
63 75anti-parallel
Strand 3
B
78 90anti-parallel
Strand 4
B
93 102anti-parallel
Strand 5
B
3 10anti-parallel
Strand 6
B
130 135anti-parallel
Strand 7
B
144 147anti-parallel
Strand 8
B
150 151anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il