Analysis of interatomic Contacts of Structural Units in PDB entry:
6D80


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D80 entry

There are 10 chains in PDB entry 6D80 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 UNK 1UNK 81
H
 UNK 1UNK 80
G
 UNK 1UNK 80
I
 UNK 1UNK 81
J
 UNK 1UNK 80
K
 UNK 1UNK 79
A
 ASP 124VAL 461
B
 ASP 124VAL 461
C
 ASP 124VAL 461
D
 ASP 124VAL 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 6D80. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
1 11Right-handed alpha
Helix 2
AA2
F
11 36Right-handed alpha
Helix 3
AA3
F
42 79Right-handed alpha
Helix 4
AA4
H
5 36Right-handed alpha
Helix 5
AA5
H
42 66Right-handed alpha
Helix 6
AA6
H
68 76Right-handed alpha
Helix 7
AA7
G
2 25Right-handed alpha
Helix 8
AA8
G
25 36Right-handed alpha
Helix 9
AA9
G
42 80Right-handed alpha
Helix 10
AB1
I
3 39Right-handed alpha
Helix 11
AB2
I
42 58Right-handed alpha
Helix 12
AB3
I
58 79Right-handed alpha
Helix 13
AB4
J
2 25Right-handed alpha
Helix 14
AB5
J
27 36Right-handed alpha
Helix 15
AB6
J
42 63Right-handed alpha
Helix 16
AB7
J
64 67Right-handed 310
Helix 17
AB8
J
68 80Right-handed alpha
Helix 18
AB9
K
2 36Right-handed alpha
Helix 19
AC1
K
42 62Right-handed alpha
Helix 20
AC2
K
62 76Right-handed alpha
Helix 21
AC3
A
164 175Right-handed alpha
Helix 22
AC4
A
268 280Right-handed alpha
Helix 23
AC5
A
302 363Right-handed alpha
Helix 24
AC6
A
367 370Right-handed 310
Helix 25
AC7
A
371 390Right-handed alpha
Helix 26
AC8
A
413 418Right-handed alpha
Helix 27
AC9
A
422 446Right-handed alpha
Helix 28
AD1
A
451 459Right-handed 310
Helix 29
AD2
B
164 175Right-handed alpha
Helix 30
AD3
B
268 280Right-handed alpha
Helix 31
AD4
B
302 307Right-handed alpha
Helix 32
AD5
B
307 362Right-handed alpha
Helix 33
AD6
B
367 370Right-handed 310
Helix 34
AD7
B
371 392Right-handed alpha
Helix 35
AD8
B
406 419Right-handed alpha
Helix 36
AD9
B
421 447Right-handed alpha
Helix 37
AE1
B
452 457Right-handed alpha
Helix 38
AE2
C
164 175Right-handed alpha
Helix 39
AE3
C
268 280Right-handed alpha
Helix 40
AE4
C
302 363Right-handed alpha
Helix 41
AE5
C
367 389Right-handed alpha
Helix 42
AE6
C
413 418Right-handed alpha
Helix 43
AE7
C
422 447Right-handed alpha
Helix 44
AE8
C
455 459Right-handed 310
Helix 45
AE9
D
165 174Right-handed alpha
Helix 46
AF1
D
268 280Right-handed alpha
Helix 47
AF2
D
302 364Right-handed alpha
Helix 48
AF3
D
371 386Right-handed alpha
Helix 49
AF4
D
387 391Right-handed 310
Helix 50
AF5
D
406 415Right-handed alpha
Helix 51
AF6
D
421 446Right-handed alpha
Helix 52
AF7
D
452 457Right-handed alpha
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There are 4 sheets in PDB entry 6D80. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
A
138 144anti-parallel
Strand 3
A
153 159anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
260 263anti-parallel
Strand 3
B
154 159parallel
Strand 4
B
138 143anti-parallel
Strand 5
B
129 131anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 284first strand
Strand 2
B
296 297anti-parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
153 159first strand
Strand 2
C
138 144anti-parallel
Strand 3
C
127 131anti-parallel
Strand 4
C
296 299parallel
Strand 5
C
281 285anti-parallel
Strand 6
C
192 195anti-parallel
Strand 7
C
261 263anti-parallel
Strand 8
D
154 159parallel
Strand 9
D
138 143anti-parallel
Strand 10
D
127 132anti-parallel
Strand 11
D
297 299parallel
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