Analysis of interatomic Contacts of Structural Units in PDB entry:
6D83

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D83 entry

There are 8 chains in PDB entry 6D83 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
T	THR 4	GLY 16
L	LYS 218	PRO 227
B	GLU 14	GLU 583
C	GLU 17	LYS 181
G	PRO 4	GLU 588
H	GLU 17	ASN 179
M	SER 2	GLN 423
S	MET 1	GLN 142

There are101 helices in PDB entry 6D83. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	15	23	Right-handed alpha
Helix 2	AA2	B	26	44	Right-handed alpha
Helix 3	AA3	B	47	49	Right-handed 310
Helix 4	AA4	B	50	55	Right-handed alpha
Helix 5	AA5	B	56	59	Right-handed 310
Helix 6	AA6	B	65	76	Right-handed alpha
Helix 7	AA7	B	83	86	Right-handed 310
Helix 8	AA8	B	87	95	Right-handed alpha
Helix 9	AA9	B	99	113	Right-handed alpha
Helix 10	AB1	B	122	131	Right-handed alpha
Helix 11	AB2	B	134	152	Right-handed alpha
Helix 12	AB3	B	152	159	Right-handed alpha
Helix 13	AB4	B	160	168	Right-handed alpha
Helix 14	AB5	B	173	191	Right-handed alpha
Helix 15	AB6	B	200	210	Right-handed alpha
Helix 16	AB7	B	217	222	Right-handed alpha
Helix 17	AB8	B	234	245	Right-handed alpha
Helix 18	AB9	B	246	250	Right-handed 310
Helix 19	AC1	B	254	267	Right-handed alpha
Helix 20	AC2	B	275	291	Right-handed alpha
Helix 21	AC3	B	292	294	Right-handed 310
Helix 22	AC4	B	295	313	Right-handed alpha
Helix 23	AC5	B	321	325	Right-handed 310
Helix 24	AC6	B	331	346	Right-handed alpha
Helix 25	AC7	B	350	360	Right-handed alpha
Helix 26	AC8	B	366	384	Right-handed alpha
Helix 27	AC9	B	387	400	Right-handed alpha
Helix 28	AD1	B	403	421	Right-handed alpha
Helix 29	AD2	B	428	433	Right-handed alpha
Helix 30	AD3	B	441	455	Right-handed alpha
Helix 31	AD4	B	461	467	Right-handed alpha
Helix 32	AD5	B	472	476	Right-handed 310
Helix 33	AD6	B	478	495	Right-handed alpha
Helix 34	AD7	B	499	512	Right-handed alpha
Helix 35	AD8	B	516	533	Right-handed alpha
Helix 36	AD9	B	536	541	Right-handed alpha
Helix 37	AE1	B	556	565	Right-handed alpha
Helix 38	AE2	B	569	573	Right-handed 310
Helix 39	AE3	C	29	39	Right-handed alpha
Helix 40	AE4	C	74	79	Right-handed 310
Helix 41	AE5	C	96	111	Right-handed alpha
Helix 42	AE6	C	137	144	Right-handed alpha
Helix 43	AE7	C	145	148	Right-handed 310
Helix 44	AE8	C	165	178	Right-handed alpha
Helix 45	AE9	G	6	16	Right-handed alpha
Helix 46	AF1	G	19	39	Right-handed alpha
Helix 47	AF2	G	45	60	Right-handed alpha
Helix 48	AF3	G	67	75	Right-handed alpha
Helix 49	AF4	G	78	93	Right-handed alpha
Helix 50	AF5	G	94	98	Right-handed 310
Helix 51	AF6	G	99	101	Right-handed 310
Helix 52	AF7	G	102	111	Right-handed alpha
Helix 53	AF8	G	115	130	Right-handed alpha
Helix 54	AF9	G	131	143	Right-handed alpha
Helix 55	AG1	G	144	147	Right-handed 310
Helix 56	AG2	G	150	168	Right-handed alpha
Helix 57	AG3	G	169	172	Right-handed 310
Helix 58	AG4	G	187	205	Right-handed alpha
Helix 59	AG5	G	205	213	Right-handed alpha
Helix 60	AG6	G	215	228	Right-handed alpha
Helix 61	AG7	G	242	255	Right-handed alpha
Helix 62	AG8	G	261	267	Right-handed alpha
Helix 63	AG9	G	267	275	Right-handed alpha
Helix 64	AH1	G	282	299	Right-handed alpha
Helix 65	AH2	G	302	317	Right-handed alpha
Helix 66	AH3	G	321	335	Right-handed alpha
Helix 67	AH4	G	339	344	Right-handed alpha
Helix 68	AH5	G	346	353	Right-handed alpha
Helix 69	AH6	G	354	356	Right-handed 310
Helix 70	AH7	G	358	373	Right-handed alpha
Helix 71	AH8	G	377	391	Right-handed alpha
Helix 72	AH9	G	396	411	Right-handed alpha
Helix 73	AI1	G	414	429	Right-handed alpha
Helix 74	AI2	G	437	448	Right-handed alpha
Helix 75	AI3	G	452	464	Right-handed alpha
Helix 76	AI4	G	469	488	Right-handed alpha
Helix 77	AI5	G	503	515	Right-handed alpha
Helix 78	AI6	G	521	537	Right-handed alpha
Helix 79	AI7	G	543	551	Right-handed alpha
Helix 80	AI8	G	556	573	Right-handed alpha
Helix 81	AI9	H	29	39	Right-handed alpha
Helix 82	AJ1	H	74	82	Right-handed 310
Helix 83	AJ2	H	96	98	Right-handed 310
Helix 84	AJ3	H	99	111	Right-handed alpha
Helix 85	AJ4	H	135	144	Right-handed alpha
Helix 86	AJ5	H	145	148	Right-handed 310
Helix 87	AJ6	H	165	178	Right-handed alpha
Helix 88	AJ7	M	26	31	Right-handed 310
Helix 89	AJ8	M	32	42	Right-handed alpha
Helix 90	AJ9	M	76	95	Right-handed alpha
Helix 91	AK1	M	99	104	Right-handed alpha
Helix 92	AK2	M	106	117	Right-handed alpha
Helix 93	AK3	M	127	133	Right-handed alpha
Helix 94	AK4	M	150	154	Right-handed 310
Helix 95	AK5	M	216	224	Right-handed alpha
Helix 96	AK6	M	243	251	Right-handed alpha
Helix 97	AK7	S	24	41	Right-handed alpha
Helix 98	AK8	S	77	96	Right-handed alpha
Helix 99	AK9	S	99	106	Right-handed alpha
Helix 100	AL1	S	106	116	Right-handed alpha
Helix 101	AL2	S	129	142	Right-handed alpha

There are 13 sheets in PDB entry 6D83. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	9	10	first strand
Strand 2	M	406	420	anti-parallel
Strand 3	M	376	377	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	236	238	first strand
Strand 2	M	260	270	anti-parallel
Strand 3	M	189	202	anti-parallel
Strand 4	M	170	183	anti-parallel
Strand 5	M	406	420	parallel
Strand 6	M	381	383	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	22	first strand
Strand 2	C	61	68	parallel
Strand 3	C	51	58	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	93	first strand
Strand 2	C	123	126	parallel
Strand 3	C	155	158	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	236	237	first strand
Strand 2	G	240	241	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	57	first strand
Strand 2	H	62	68	anti-parallel
Strand 3	H	18	24	parallel
Strand 4	H	87	92	parallel
Strand 5	H	120	125	parallel
Strand 6	H	156	157	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	15	20	first strand
Strand 2	M	5	9	anti-parallel
Strand 3	M	66	71	anti-parallel
Strand 4	M	55	61	anti-parallel
Strand 5	M	49	52	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	118	119	first strand
Strand 2	M	122	123	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	253	255	first strand
Strand 2	M	209	214	anti-parallel
Strand 3	M	392	398	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	277	280	first strand
Strand 2	M	292	299	anti-parallel
Strand 3	M	353	361	anti-parallel
Strand 4	M	321	326	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	306	315	first strand
Strand 2	M	340	349	anti-parallel
Strand 3	M	331	335	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	14	19	first strand
Strand 2	S	4	8	anti-parallel
Strand 3	S	66	72	anti-parallel
Strand 4	S	55	61	anti-parallel
Strand 5	S	49	51	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	118	119	first strand
Strand 2	S	122	123	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D83

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D83