Analysis of interatomic Contacts of Structural Units in PDB entry:
6D84

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D84 entry

There are 16 chains in PDB entry 6D84 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
T	THR 4	GLY 16
L	LYS 218	PRO 227
B	GLU 14	GLU 583
C	GLU 17	LYS 181
G	PRO 4	GLU 588
H	GLU 17	ASN 179
M	SER 2	GLN 423
S	MET 1	GLN 142
R	THR 4	GLY 16
O	LYS 218	PRO 227
F	GLU 14	GLU 583
I	GLU 17	LYS 181
K	PRO 4	GLU 588
N	GLU 17	ASN 179
P	SER 2	GLN 423
Q	MET 1	GLN 142

There are208 helices in PDB entry 6D84. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	15	23	Right-handed alpha
Helix 2	AA2	B	26	44	Right-handed alpha
Helix 3	AA3	B	47	49	Right-handed 310
Helix 4	AA4	B	50	55	Right-handed alpha
Helix 5	AA5	B	56	59	Right-handed 310
Helix 6	AA6	B	62	76	Right-handed alpha
Helix 7	AA7	B	82	86	Right-handed 310
Helix 8	AA8	B	87	95	Right-handed alpha
Helix 9	AA9	B	99	113	Right-handed alpha
Helix 10	AB1	B	123	131	Right-handed alpha
Helix 11	AB2	B	134	152	Right-handed alpha
Helix 12	AB3	B	152	160	Right-handed alpha
Helix 13	AB4	B	160	170	Right-handed alpha
Helix 14	AB5	B	173	191	Right-handed alpha
Helix 15	AB6	B	200	210	Right-handed alpha
Helix 16	AB7	B	217	225	Right-handed alpha
Helix 17	AB8	B	226	228	Right-handed 310
Helix 18	AB9	B	233	245	Right-handed alpha
Helix 19	AC1	B	246	250	Right-handed 310
Helix 20	AC2	B	252	267	Right-handed alpha
Helix 21	AC3	B	274	291	Right-handed alpha
Helix 22	AC4	B	292	294	Right-handed 310
Helix 23	AC5	B	295	313	Right-handed alpha
Helix 24	AC6	B	321	325	Right-handed 310
Helix 25	AC7	B	331	345	Right-handed alpha
Helix 26	AC8	B	350	360	Right-handed alpha
Helix 27	AC9	B	366	384	Right-handed alpha
Helix 28	AD1	B	387	400	Right-handed alpha
Helix 29	AD2	B	403	421	Right-handed alpha
Helix 30	AD3	B	428	433	Right-handed alpha
Helix 31	AD4	B	441	455	Right-handed alpha
Helix 32	AD5	B	461	470	Right-handed alpha
Helix 33	AD6	B	472	476	Right-handed 310
Helix 34	AD7	B	478	495	Right-handed alpha
Helix 35	AD8	B	499	512	Right-handed alpha
Helix 36	AD9	B	516	533	Right-handed alpha
Helix 37	AE1	B	536	541	Right-handed alpha
Helix 38	AE2	B	556	565	Right-handed alpha
Helix 39	AE3	B	569	575	Right-handed alpha
Helix 40	AE4	B	577	581	Right-handed 310
Helix 41	AE5	C	29	39	Right-handed alpha
Helix 42	AE6	C	71	79	Right-handed 310
Helix 43	AE7	C	96	111	Right-handed alpha
Helix 44	AE8	C	137	144	Right-handed alpha
Helix 45	AE9	C	145	148	Right-handed 310
Helix 46	AF1	C	165	178	Right-handed alpha
Helix 47	AF2	G	6	16	Right-handed alpha
Helix 48	AF3	G	19	39	Right-handed alpha
Helix 49	AF4	G	45	60	Right-handed alpha
Helix 50	AF5	G	67	75	Right-handed alpha
Helix 51	AF6	G	78	93	Right-handed alpha
Helix 52	AF7	G	94	98	Right-handed 310
Helix 53	AF8	G	99	101	Right-handed 310
Helix 54	AF9	G	102	112	Right-handed alpha
Helix 55	AG1	G	115	130	Right-handed alpha
Helix 56	AG2	G	131	143	Right-handed alpha
Helix 57	AG3	G	150	168	Right-handed alpha
Helix 58	AG4	G	171	175	Right-handed 310
Helix 59	AG5	G	187	205	Right-handed alpha
Helix 60	AG6	G	205	213	Right-handed alpha
Helix 61	AG7	G	215	228	Right-handed alpha
Helix 62	AG8	G	242	256	Right-handed alpha
Helix 63	AG9	G	261	267	Right-handed alpha
Helix 64	AH1	G	267	275	Right-handed alpha
Helix 65	AH2	G	282	299	Right-handed alpha
Helix 66	AH3	G	302	319	Right-handed alpha
Helix 67	AH4	G	321	335	Right-handed alpha
Helix 68	AH5	G	339	344	Right-handed alpha
Helix 69	AH6	G	346	353	Right-handed alpha
Helix 70	AH7	G	354	356	Right-handed 310
Helix 71	AH8	G	358	372	Right-handed alpha
Helix 72	AH9	G	377	391	Right-handed alpha
Helix 73	AI1	G	395	412	Right-handed alpha
Helix 74	AI2	G	414	429	Right-handed alpha
Helix 75	AI3	G	436	448	Right-handed alpha
Helix 76	AI4	G	452	464	Right-handed alpha
Helix 77	AI5	G	469	488	Right-handed alpha
Helix 78	AI6	G	503	515	Right-handed alpha
Helix 79	AI7	G	520	533	Right-handed alpha
Helix 80	AI8	G	543	551	Right-handed alpha
Helix 81	AI9	G	552	554	Right-handed 310
Helix 82	AJ1	G	556	572	Right-handed alpha
Helix 83	AJ2	G	573	578	Right-handed alpha
Helix 84	AJ3	H	29	39	Right-handed alpha
Helix 85	AJ4	H	74	82	Right-handed 310
Helix 86	AJ5	H	96	98	Right-handed 310
Helix 87	AJ6	H	99	112	Right-handed alpha
Helix 88	AJ7	H	135	144	Right-handed alpha
Helix 89	AJ8	H	145	148	Right-handed 310
Helix 90	AJ9	H	165	178	Right-handed alpha
Helix 91	AK1	M	26	31	Right-handed 310
Helix 92	AK2	M	32	42	Right-handed alpha
Helix 93	AK3	M	76	95	Right-handed alpha
Helix 94	AK4	M	99	104	Right-handed alpha
Helix 95	AK5	M	106	117	Right-handed alpha
Helix 96	AK6	M	127	133	Right-handed alpha
Helix 97	AK7	M	150	155	Right-handed alpha
Helix 98	AK8	M	216	224	Right-handed alpha
Helix 99	AK9	M	243	251	Right-handed alpha
Helix 100	AL1	S	24	41	Right-handed alpha
Helix 101	AL2	S	77	95	Right-handed alpha
Helix 102	AL3	S	99	106	Right-handed alpha
Helix 103	AL4	S	106	117	Right-handed alpha
Helix 104	AL5	S	129	142	Right-handed alpha
Helix 105	AL6	F	15	23	Right-handed alpha
Helix 106	AL7	F	26	44	Right-handed alpha
Helix 107	AL8	F	47	49	Right-handed 310
Helix 108	AL9	F	50	55	Right-handed alpha
Helix 109	AM1	F	56	59	Right-handed 310
Helix 110	AM2	F	62	76	Right-handed alpha
Helix 111	AM3	F	82	86	Right-handed 310
Helix 112	AM4	F	87	95	Right-handed alpha
Helix 113	AM5	F	99	113	Right-handed alpha
Helix 114	AM6	F	123	131	Right-handed alpha
Helix 115	AM7	F	134	152	Right-handed alpha
Helix 116	AM8	F	152	160	Right-handed alpha
Helix 117	AM9	F	160	170	Right-handed alpha
Helix 118	AN1	F	173	191	Right-handed alpha
Helix 119	AN2	F	200	210	Right-handed alpha
Helix 120	AN3	F	217	225	Right-handed alpha
Helix 121	AN4	F	226	228	Right-handed 310
Helix 122	AN5	F	233	245	Right-handed alpha
Helix 123	AN6	F	246	250	Right-handed 310
Helix 124	AN7	F	252	267	Right-handed alpha
Helix 125	AN8	F	274	291	Right-handed alpha
Helix 126	AN9	F	292	294	Right-handed 310
Helix 127	AO1	F	295	313	Right-handed alpha
Helix 128	AO2	F	321	325	Right-handed 310
Helix 129	AO3	F	331	345	Right-handed alpha
Helix 130	AO4	F	350	360	Right-handed alpha
Helix 131	AO5	F	366	384	Right-handed alpha
Helix 132	AO6	F	387	400	Right-handed alpha
Helix 133	AO7	F	403	421	Right-handed alpha
Helix 134	AO8	F	428	433	Right-handed alpha
Helix 135	AO9	F	441	455	Right-handed alpha
Helix 136	AP1	F	461	470	Right-handed alpha
Helix 137	AP2	F	472	476	Right-handed 310
Helix 138	AP3	F	478	495	Right-handed alpha
Helix 139	AP4	F	499	512	Right-handed alpha
Helix 140	AP5	F	516	533	Right-handed alpha
Helix 141	AP6	F	536	541	Right-handed alpha
Helix 142	AP7	F	556	565	Right-handed alpha
Helix 143	AP8	F	569	575	Right-handed alpha
Helix 144	AP9	F	577	581	Right-handed 310
Helix 145	AQ1	I	29	39	Right-handed alpha
Helix 146	AQ2	I	74	79	Right-handed 310
Helix 147	AQ3	I	99	111	Right-handed alpha
Helix 148	AQ4	I	137	144	Right-handed alpha
Helix 149	AQ5	I	145	148	Right-handed 310
Helix 150	AQ6	I	165	178	Right-handed alpha
Helix 151	AQ7	K	6	16	Right-handed alpha
Helix 152	AQ8	K	19	39	Right-handed alpha
Helix 153	AQ9	K	45	60	Right-handed alpha
Helix 154	AR1	K	67	75	Right-handed alpha
Helix 155	AR2	K	78	93	Right-handed alpha
Helix 156	AR3	K	94	98	Right-handed 310
Helix 157	AR4	K	99	101	Right-handed 310
Helix 158	AR5	K	102	112	Right-handed alpha
Helix 159	AR6	K	115	130	Right-handed alpha
Helix 160	AR7	K	131	143	Right-handed alpha
Helix 161	AR8	K	150	168	Right-handed alpha
Helix 162	AR9	K	171	175	Right-handed 310
Helix 163	AS1	K	187	205	Right-handed alpha
Helix 164	AS2	K	205	213	Right-handed alpha
Helix 165	AS3	K	215	228	Right-handed alpha
Helix 166	AS4	K	242	256	Right-handed alpha
Helix 167	AS5	K	261	267	Right-handed alpha
Helix 168	AS6	K	267	275	Right-handed alpha
Helix 169	AS7	K	282	299	Right-handed alpha
Helix 170	AS8	K	302	319	Right-handed alpha
Helix 171	AS9	K	321	335	Right-handed alpha
Helix 172	AT1	K	339	344	Right-handed alpha
Helix 173	AT2	K	346	353	Right-handed alpha
Helix 174	AT3	K	354	356	Right-handed 310
Helix 175	AT4	K	358	372	Right-handed alpha
Helix 176	AT5	K	377	391	Right-handed alpha
Helix 177	AT6	K	395	412	Right-handed alpha
Helix 178	AT7	K	414	429	Right-handed alpha
Helix 179	AT8	K	436	448	Right-handed alpha
Helix 180	AT9	K	452	464	Right-handed alpha
Helix 181	AU1	K	469	488	Right-handed alpha
Helix 182	AU2	K	503	515	Right-handed alpha
Helix 183	AU3	K	520	533	Right-handed alpha
Helix 184	AU4	K	543	551	Right-handed alpha
Helix 185	AU5	K	552	554	Right-handed 310
Helix 186	AU6	K	556	572	Right-handed alpha
Helix 187	AU7	K	573	578	Right-handed alpha
Helix 188	AU8	N	29	38	Right-handed alpha
Helix 189	AU9	N	74	81	Right-handed 310
Helix 190	AV1	N	96	98	Right-handed 310
Helix 191	AV2	N	99	111	Right-handed alpha
Helix 192	AV3	N	135	144	Right-handed alpha
Helix 193	AV4	N	145	148	Right-handed 310
Helix 194	AV5	N	165	176	Right-handed alpha
Helix 195	AV6	P	26	31	Right-handed 310
Helix 196	AV7	P	32	42	Right-handed alpha
Helix 197	AV8	P	76	95	Right-handed alpha
Helix 198	AV9	P	99	104	Right-handed alpha
Helix 199	AW1	P	106	117	Right-handed alpha
Helix 200	AW2	P	127	133	Right-handed alpha
Helix 201	AW3	P	150	155	Right-handed alpha
Helix 202	AW4	P	216	224	Right-handed alpha
Helix 203	AW5	P	243	251	Right-handed alpha
Helix 204	AW6	Q	24	41	Right-handed alpha
Helix 205	AW7	Q	77	95	Right-handed alpha
Helix 206	AW8	Q	99	106	Right-handed alpha
Helix 207	AW9	Q	106	117	Right-handed alpha
Helix 208	AX1	Q	129	142	Right-handed alpha

There are 24 sheets in PDB entry 6D84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	9	10	first strand
Strand 2	M	406	420	anti-parallel
Strand 3	M	376	377	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	235	238	first strand
Strand 2	M	260	270	anti-parallel
Strand 3	M	189	203	anti-parallel
Strand 4	M	170	183	anti-parallel
Strand 5	M	406	420	parallel
Strand 6	M	382	383	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	58	first strand
Strand 2	C	61	68	anti-parallel
Strand 3	C	19	24	parallel
Strand 4	C	90	93	parallel
Strand 5	C	123	126	parallel
Strand 6	C	155	157	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	236	237	first strand
Strand 2	G	240	241	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	58	first strand
Strand 2	H	61	68	anti-parallel
Strand 3	H	18	24	parallel
Strand 4	H	87	93	parallel
Strand 5	H	120	126	parallel
Strand 6	H	153	157	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	15	20	first strand
Strand 2	M	5	9	anti-parallel
Strand 3	M	66	71	anti-parallel
Strand 4	M	55	61	anti-parallel
Strand 5	M	49	52	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	118	119	first strand
Strand 2	M	122	123	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	253	255	first strand
Strand 2	M	209	214	anti-parallel
Strand 3	M	392	398	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	277	283	first strand
Strand 2	M	292	299	anti-parallel
Strand 3	M	353	359	anti-parallel
Strand 4	M	324	327	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	306	312	first strand
Strand 2	M	340	349	anti-parallel
Strand 3	M	331	335	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	14	19	first strand
Strand 2	S	4	8	anti-parallel
Strand 3	S	66	72	anti-parallel
Strand 4	S	55	61	anti-parallel
Strand 5	S	49	51	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	118	119	first strand
Strand 2	S	122	123	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	9	10	first strand
Strand 2	P	406	420	anti-parallel
Strand 3	P	376	377	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	235	238	first strand
Strand 2	P	260	270	anti-parallel
Strand 3	P	189	203	anti-parallel
Strand 4	P	170	183	anti-parallel
Strand 5	P	406	420	parallel
Strand 6	P	382	383	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	51	58	first strand
Strand 2	I	61	68	anti-parallel
Strand 3	I	19	24	parallel
Strand 4	I	90	93	parallel
Strand 5	I	123	126	parallel
Strand 6	I	155	157	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	236	237	first strand
Strand 2	K	240	241	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	51	57	first strand
Strand 2	N	62	68	anti-parallel
Strand 3	N	18	24	parallel
Strand 4	N	87	93	parallel
Strand 5	N	121	126	parallel
Strand 6	N	153	157	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	15	20	first strand
Strand 2	P	5	9	anti-parallel
Strand 3	P	66	71	anti-parallel
Strand 4	P	55	61	anti-parallel
Strand 5	P	49	52	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	118	119	first strand
Strand 2	P	122	123	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	253	255	first strand
Strand 2	P	209	214	anti-parallel
Strand 3	P	392	398	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	277	283	first strand
Strand 2	P	292	299	anti-parallel
Strand 3	P	353	359	anti-parallel
Strand 4	P	324	327	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	306	312	first strand
Strand 2	P	340	349	anti-parallel
Strand 3	P	331	335	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	14	19	first strand
Strand 2	Q	4	8	anti-parallel
Strand 3	Q	66	72	anti-parallel
Strand 4	Q	55	61	anti-parallel
Strand 5	Q	49	51	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	118	119	first strand
Strand 2	Q	122	123	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D84

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D84