Analysis of interatomic Contacts of Structural Units in PDB entry:
6D89

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D89 entry

There are 4 chains in PDB entry 6D89 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ALA 25	LYS 595
D	ALA 25	LYS 595
A	ALA 25	LYS 595
B	ALA 25	LYS 595

There are 54 helices in PDB entry 6D89. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	30	34	Right-handed 310
Helix 2	AA2	C	52	57	Right-handed alpha
Helix 3	AA3	C	58	61	Right-handed 310
Helix 4	AA4	C	74	78	Right-handed 310
Helix 5	AA5	C	91	95	Right-handed 310
Helix 6	AA6	C	237	240	Right-handed 310
Helix 7	AA7	C	326	341	Right-handed alpha
Helix 8	AA8	C	353	364	Right-handed alpha
Helix 9	AA9	C	381	400	Right-handed alpha
Helix 10	AB1	C	417	435	Right-handed alpha
Helix 11	AB2	C	458	464	Right-handed 310
Helix 12	AB3	C	479	486	Right-handed 310
Helix 13	AB4	C	518	534	Right-handed alpha
Helix 14	AB5	C	577	594	Right-handed alpha
Helix 15	AB6	D	30	34	Right-handed 310
Helix 16	AB7	D	57	61	Right-handed 310
Helix 17	AB8	D	74	78	Right-handed 310
Helix 18	AB9	D	91	95	Right-handed 310
Helix 19	AC1	D	237	240	Right-handed 310
Helix 20	AC2	D	326	341	Right-handed alpha
Helix 21	AC3	D	353	364	Right-handed alpha
Helix 22	AC4	D	381	400	Right-handed alpha
Helix 23	AC5	D	417	435	Right-handed alpha
Helix 24	AC6	D	458	464	Right-handed 310
Helix 25	AC7	D	479	486	Right-handed 310
Helix 26	AC8	D	518	535	Right-handed alpha
Helix 27	AC9	D	577	595	Right-handed alpha
Helix 28	AD1	A	30	34	Right-handed 310
Helix 29	AD2	A	52	57	Right-handed alpha
Helix 30	AD3	A	58	61	Right-handed 310
Helix 31	AD4	A	74	78	Right-handed 310
Helix 32	AD5	A	91	95	Right-handed 310
Helix 33	AD6	A	237	240	Right-handed 310
Helix 34	AD7	A	326	341	Right-handed alpha
Helix 35	AD8	A	353	364	Right-handed alpha
Helix 36	AD9	A	381	400	Right-handed alpha
Helix 37	AE1	A	417	435	Right-handed alpha
Helix 38	AE2	A	458	464	Right-handed 310
Helix 39	AE3	A	479	486	Right-handed 310
Helix 40	AE4	A	518	536	Right-handed alpha
Helix 41	AE5	A	577	595	Right-handed alpha
Helix 42	AE6	B	30	34	Right-handed 310
Helix 43	AE7	B	57	61	Right-handed 310
Helix 44	AE8	B	74	78	Right-handed 310
Helix 45	AE9	B	91	95	Right-handed 310
Helix 46	AF1	B	237	240	Right-handed 310
Helix 47	AF2	B	326	340	Right-handed alpha
Helix 48	AF3	B	353	364	Right-handed alpha
Helix 49	AF4	B	381	400	Right-handed alpha
Helix 50	AF5	B	417	435	Right-handed alpha
Helix 51	AF6	B	458	464	Right-handed 310
Helix 52	AF7	B	479	486	Right-handed 310
Helix 53	AF8	B	518	534	Right-handed alpha
Helix 54	AF9	B	577	594	Right-handed alpha

There are 34 sheets in PDB entry 6D89. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	192	197	anti-parallel
Strand 3	C	116	121	anti-parallel
Strand 4	C	147	150	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	83	first strand
Strand 2	C	41	48	anti-parallel
Strand 3	C	100	107	anti-parallel
Strand 4	C	160	167	anti-parallel
Strand 5	C	127	132	anti-parallel
Strand 6	C	135	141	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	209	first strand
Strand 2	C	216	224	anti-parallel
Strand 3	C	252	258	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	241	246	first strand
Strand 2	C	231	236	anti-parallel
Strand 3	C	272	277	anti-parallel
Strand 4	C	282	287	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	292	295	first strand
Strand 2	C	298	301	anti-parallel
Strand 3	C	304	306	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	439	441	first strand
Strand 2	C	405	409	parallel
Strand 3	C	366	370	parallel
Strand 4	C	344	348	parallel
Strand 5	C	308	314	parallel
Strand 6	C	539	542	parallel
Strand 7	C	496	500	parallel
Strand 8	C	467	470	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	446	450	first strand
Strand 2	C	453	456	anti-parallel
Strand 3	C	487	488	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	550	551	first strand
Strand 2	C	564	565	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	38	first strand
Strand 2	D	192	197	anti-parallel
Strand 3	D	116	121	anti-parallel
Strand 4	D	147	150	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	83	first strand
Strand 2	D	41	48	anti-parallel
Strand 3	D	100	107	anti-parallel
Strand 4	D	160	167	anti-parallel
Strand 5	D	127	132	anti-parallel
Strand 6	D	135	141	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	209	first strand
Strand 2	D	216	224	anti-parallel
Strand 3	D	252	258	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	246	first strand
Strand 2	D	231	236	anti-parallel
Strand 3	D	272	277	anti-parallel
Strand 4	D	282	287	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	292	295	first strand
Strand 2	D	298	301	anti-parallel
Strand 3	D	304	306	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	309	first strand
Strand 2	D	539	542	parallel
Strand 3	D	496	500	parallel
Strand 4	D	467	470	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	312	314	first strand
Strand 2	D	344	348	parallel
Strand 3	D	366	370	parallel
Strand 4	D	405	409	parallel
Strand 5	D	439	441	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	446	450	first strand
Strand 2	D	453	456	anti-parallel
Strand 3	D	487	488	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	550	551	first strand
Strand 2	D	564	565	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	192	197	anti-parallel
Strand 3	A	116	121	anti-parallel
Strand 4	A	147	150	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	83	first strand
Strand 2	A	41	48	anti-parallel
Strand 3	A	100	107	anti-parallel
Strand 4	A	160	167	anti-parallel
Strand 5	A	127	132	anti-parallel
Strand 6	A	135	141	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	209	first strand
Strand 2	A	216	224	anti-parallel
Strand 3	A	252	258	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	246	first strand
Strand 2	A	231	236	anti-parallel
Strand 3	A	272	277	anti-parallel
Strand 4	A	282	287	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	295	first strand
Strand 2	A	298	301	anti-parallel
Strand 3	A	304	306	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	309	first strand
Strand 2	A	539	542	parallel
Strand 3	A	496	500	parallel
Strand 4	A	467	470	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	313	first strand
Strand 2	A	344	347	parallel
Strand 3	A	366	370	parallel
Strand 4	A	405	409	parallel
Strand 5	A	439	441	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	446	450	first strand
Strand 2	A	453	456	anti-parallel
Strand 3	A	487	488	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	551	first strand
Strand 2	A	564	565	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	192	197	anti-parallel
Strand 3	B	116	121	anti-parallel
Strand 4	B	147	150	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	83	first strand
Strand 2	B	41	47	anti-parallel
Strand 3	B	100	107	anti-parallel
Strand 4	B	160	167	anti-parallel
Strand 5	B	127	132	anti-parallel
Strand 6	B	135	141	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	209	first strand
Strand 2	B	216	224	anti-parallel
Strand 3	B	252	258	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	246	first strand
Strand 2	B	231	236	anti-parallel
Strand 3	B	272	277	anti-parallel
Strand 4	B	282	287	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	295	first strand
Strand 2	B	298	301	anti-parallel
Strand 3	B	304	305	anti-parallel

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There are 8 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	441	first strand
Strand 2	B	405	409	parallel
Strand 3	B	366	370	parallel
Strand 4	B	344	347	parallel
Strand 5	B	308	313	parallel
Strand 6	B	539	542	parallel
Strand 7	B	496	500	parallel
Strand 8	B	467	470	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	454	first strand
Strand 2	B	487	488	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	551	first strand
Strand 2	B	564	565	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D89

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D89