Analysis of interatomic Contacts of Structural Units in PDB entry:
6D8A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D8A entry

There are 6 chains in PDB entry 6D8A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 20	LEU 777
C	U 1	A 18
G	T -13	C 7
F	ARG 20	LEU 777
H	U 1	A 18
J	G -14	C 7

There are 47 helices in PDB entry 6D8A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	46	Right-handed 310
Helix 2	AA2	A	47	55	Right-handed alpha
Helix 3	AA3	A	93	107	Right-handed alpha
Helix 4	AA4	A	127	137	Right-handed alpha
Helix 5	AA5	A	142	144	Right-handed 310
Helix 6	AA6	A	183	190	Right-handed alpha
Helix 7	AA7	A	244	257	Right-handed alpha
Helix 8	AA8	A	259	276	Right-handed alpha
Helix 9	AA9	A	276	293	Right-handed alpha
Helix 10	AB1	A	341	350	Right-handed alpha
Helix 11	AB2	A	353	357	Right-handed 310
Helix 12	AB3	A	372	386	Right-handed alpha
Helix 13	AB4	A	391	395	Right-handed 310
Helix 14	AB5	A	397	402	Right-handed alpha
Helix 15	AB6	A	423	439	Right-handed alpha
Helix 16	AB7	A	450	454	Right-handed 310
Helix 17	AB8	A	457	460	Right-handed 310
Helix 18	AB9	A	461	473	Right-handed alpha
Helix 19	AC1	A	482	486	Right-handed alpha
Helix 20	AC2	A	488	507	Right-handed alpha
Helix 21	AC3	A	570	591	Right-handed alpha
Helix 22	AC4	A	609	625	Right-handed alpha
Helix 23	AC5	A	714	727	Right-handed alpha
Helix 24	AC6	A	739	756	Right-handed alpha
Helix 25	AC7	A	763	768	Right-handed 310
Helix 26	AC8	F	44	46	Right-handed 310
Helix 27	AC9	F	47	55	Right-handed alpha
Helix 28	AD1	F	93	108	Right-handed alpha
Helix 29	AD2	F	127	137	Right-handed alpha
Helix 30	AD3	F	140	144	Right-handed 310
Helix 31	AD4	F	183	190	Right-handed alpha
Helix 32	AD5	F	244	257	Right-handed alpha
Helix 33	AD6	F	259	276	Right-handed alpha
Helix 34	AD7	F	276	293	Right-handed alpha
Helix 35	AD8	F	341	350	Right-handed alpha
Helix 36	AD9	F	372	386	Right-handed alpha
Helix 37	AE1	F	397	403	Right-handed alpha
Helix 38	AE2	F	423	438	Right-handed alpha
Helix 39	AE3	F	457	460	Right-handed 310
Helix 40	AE4	F	461	473	Right-handed alpha
Helix 41	AE5	F	482	486	Right-handed alpha
Helix 42	AE6	F	488	507	Right-handed alpha
Helix 43	AE7	F	570	591	Right-handed alpha
Helix 44	AE8	F	609	625	Right-handed alpha
Helix 45	AE9	F	687	691	Right-handed 310
Helix 46	AF1	F	714	727	Right-handed alpha
Helix 47	AF2	F	739	756	Right-handed alpha

There are 15 sheets in PDB entry 6D8A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	115	first strand
Strand 2	A	119	122	anti-parallel
Strand 3	A	146	162	anti-parallel
Strand 4	A	165	180	anti-parallel
Strand 5	A	22	30	anti-parallel
Strand 6	A	302	312	anti-parallel
Strand 7	A	296	299	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	115	first strand
Strand 2	A	119	122	anti-parallel
Strand 3	A	146	162	anti-parallel
Strand 4	A	165	180	anti-parallel
Strand 5	A	22	30	anti-parallel
Strand 6	A	645	646	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	64	first strand
Strand 2	A	67	72	anti-parallel
Strand 3	A	34	41	anti-parallel
Strand 4	A	83	88	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	235	first strand
Strand 2	A	222	226	anti-parallel
Strand 3	A	211	218	anti-parallel
Strand 4	A	198	201	anti-parallel
Strand 5	A	239	241	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	323	first strand
Strand 2	A	672	677	anti-parallel
Strand 3	A	680	683	anti-parallel
Strand 4	A	702	706	anti-parallel
Strand 5	A	629	638	anti-parallel
Strand 6	A	597	604	parallel
Strand 7	A	522	533	parallel
Strand 8	A	542	552	anti-parallel
Strand 9	A	557	562	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	329	330	anti-parallel
Strand 3	A	513	514	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	414	first strand
Strand 2	A	363	369	parallel
Strand 3	A	444	449	parallel
Strand 4	A	477	481	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	653	654	first strand
Strand 2	A	662	663	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	122	first strand
Strand 2	F	146	162	anti-parallel
Strand 3	F	165	180	anti-parallel
Strand 4	F	21	30	anti-parallel
Strand 5	F	302	313	anti-parallel
Strand 6	F	296	299	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	122	first strand
Strand 2	F	146	162	anti-parallel
Strand 3	F	165	180	anti-parallel
Strand 4	F	21	30	anti-parallel
Strand 5	F	645	646	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	64	first strand
Strand 2	F	67	72	anti-parallel
Strand 3	F	34	41	anti-parallel
Strand 4	F	83	88	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	224	226	first strand
Strand 2	F	211	217	anti-parallel
Strand 3	F	198	201	anti-parallel
Strand 4	F	239	241	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	321	323	first strand
Strand 2	F	672	677	anti-parallel
Strand 3	F	680	683	anti-parallel
Strand 4	F	702	706	anti-parallel
Strand 5	F	629	638	anti-parallel
Strand 6	F	597	604	parallel
Strand 7	F	522	533	parallel
Strand 8	F	542	553	anti-parallel
Strand 9	F	556	562	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	338	339	first strand
Strand 2	F	329	330	anti-parallel
Strand 3	F	513	514	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	408	414	first strand
Strand 2	F	363	369	parallel
Strand 3	F	444	449	parallel
Strand 4	F	477	481	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D8A

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D8A