Analysis of interatomic Contacts of Structural Units in PDB entry:
6D8C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D8C entry

There are 5 chains in PDB entry 6D8C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	PRO 29	SER 149
H	THR 5	CYS 374
A	PRO 29	SER 149
J	THR 5	CYS 374
B	PRO 29	ALA 39

There are115 helices in PDB entry 6D8C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	29	33	Right-handed 310
Helix 2	AA2	D	39	57	Right-handed alpha
Helix 3	AA3	D	66	71	Right-handed alpha
Helix 4	AA4	D	74	86	Right-handed alpha
Helix 5	AA5	D	99	117	Right-handed alpha
Helix 6	AA6	D	125	132	Right-handed alpha
Helix 7	AA7	D	133	148	Right-handed alpha
Helix 8	AA8	H	55	61	Right-handed alpha
Helix 9	AA9	H	78	91	Right-handed alpha
Helix 10	AB1	H	112	127	Right-handed alpha
Helix 11	AB2	H	138	146	Right-handed alpha
Helix 12	AB3	H	181	197	Right-handed alpha
Helix 13	AB4	H	202	217	Right-handed alpha
Helix 14	AB5	H	222	233	Right-handed alpha
Helix 15	AB6	H	251	255	Right-handed 310
Helix 16	AB7	H	257	261	Right-handed 310
Helix 17	AB8	H	273	285	Right-handed alpha
Helix 18	AB9	H	289	296	Right-handed alpha
Helix 19	AC1	H	308	321	Right-handed alpha
Helix 20	AC2	H	337	349	Right-handed alpha
Helix 21	AC3	H	350	356	Right-handed 310
Helix 22	AC4	H	359	366	Right-handed alpha
Helix 23	AC5	H	369	374	Right-handed alpha
Helix 24	AC6	A	29	33	Right-handed 310
Helix 25	AC7	A	39	57	Right-handed alpha
Helix 26	AC8	A	66	71	Right-handed alpha
Helix 27	AC9	A	74	86	Right-handed alpha
Helix 28	AD1	A	99	117	Right-handed alpha
Helix 29	AD2	A	125	132	Right-handed alpha
Helix 30	AD3	A	133	148	Right-handed alpha
Helix 31	AD4	J	55	61	Right-handed alpha
Helix 32	AD5	J	78	91	Right-handed alpha
Helix 33	AD6	J	112	127	Right-handed alpha
Helix 34	AD7	J	138	146	Right-handed alpha
Helix 35	AD8	J	181	197	Right-handed alpha
Helix 36	AD9	J	202	217	Right-handed alpha
Helix 37	AE1	J	222	233	Right-handed alpha
Helix 38	AE2	J	251	255	Right-handed 310
Helix 39	AE3	J	257	261	Right-handed 310
Helix 40	AE4	J	273	285	Right-handed alpha
Helix 41	AE5	J	289	296	Right-handed alpha
Helix 42	AE6	J	308	321	Right-handed alpha
Helix 43	AE7	J	337	349	Right-handed alpha
Helix 44	AE8	J	350	356	Right-handed 310
Helix 45	AE9	J	359	366	Right-handed alpha
Helix 46	AF1	J	369	374	Right-handed alpha
Helix 47	AF2	B	29	33	Right-handed 310
Helix 48	AF3	B	39	57	Right-handed alpha
Helix 49	AF4	B	66	71	Right-handed alpha
Helix 50	AF5	B	74	86	Right-handed alpha
Helix 51	AF6	B	99	117	Right-handed alpha
Helix 52	AF7	B	125	132	Right-handed alpha
Helix 53	AF8	B	133	148	Right-handed alpha
Helix 54	AF9	K	55	61	Right-handed alpha
Helix 55	AG1	K	78	91	Right-handed alpha
Helix 56	AG2	K	112	127	Right-handed alpha
Helix 57	AG3	K	138	146	Right-handed alpha
Helix 58	AG4	K	181	197	Right-handed alpha
Helix 59	AG5	K	202	217	Right-handed alpha
Helix 60	AG6	K	222	233	Right-handed alpha
Helix 61	AG7	K	251	255	Right-handed 310
Helix 62	AG8	K	257	261	Right-handed 310
Helix 63	AG9	K	273	285	Right-handed alpha
Helix 64	AH1	K	289	296	Right-handed alpha
Helix 65	AH2	K	308	321	Right-handed alpha
Helix 66	AH3	K	337	349	Right-handed alpha
Helix 67	AH4	K	350	356	Right-handed 310
Helix 68	AH5	K	359	366	Right-handed alpha
Helix 69	AH6	K	369	374	Right-handed alpha
Helix 70	AH7	C	29	33	Right-handed 310
Helix 71	AH8	C	39	57	Right-handed alpha
Helix 72	AH9	C	66	71	Right-handed alpha
Helix 73	AI1	C	74	86	Right-handed alpha
Helix 74	AI2	C	99	117	Right-handed alpha
Helix 75	AI3	C	125	132	Right-handed alpha
Helix 76	AI4	C	133	148	Right-handed alpha
Helix 77	AI5	L	55	61	Right-handed alpha
Helix 78	AI6	L	78	91	Right-handed alpha
Helix 79	AI7	L	112	127	Right-handed alpha
Helix 80	AI8	L	138	146	Right-handed alpha
Helix 81	AI9	L	181	197	Right-handed alpha
Helix 82	AJ1	L	202	217	Right-handed alpha
Helix 83	AJ2	L	222	233	Right-handed alpha
Helix 84	AJ3	L	251	255	Right-handed 310
Helix 85	AJ4	L	257	261	Right-handed 310
Helix 86	AJ5	L	273	285	Right-handed alpha
Helix 87	AJ6	L	289	296	Right-handed alpha
Helix 88	AJ7	L	308	321	Right-handed alpha
Helix 89	AJ8	L	337	349	Right-handed alpha
Helix 90	AJ9	L	350	356	Right-handed 310
Helix 91	AK1	L	359	366	Right-handed alpha
Helix 92	AK2	L	369	374	Right-handed alpha
Helix 93	AK3	E	29	33	Right-handed 310
Helix 94	AK4	E	39	57	Right-handed alpha
Helix 95	AK5	E	66	71	Right-handed alpha
Helix 96	AK6	E	74	86	Right-handed alpha
Helix 97	AK7	E	99	117	Right-handed alpha
Helix 98	AK8	E	125	132	Right-handed alpha
Helix 99	AK9	E	133	148	Right-handed alpha
Helix 100	AL1	M	55	61	Right-handed alpha
Helix 101	AL2	M	78	91	Right-handed alpha
Helix 102	AL3	M	112	127	Right-handed alpha
Helix 103	AL4	M	138	146	Right-handed alpha
Helix 104	AL5	M	181	197	Right-handed alpha
Helix 105	AL6	M	202	217	Right-handed alpha
Helix 106	AL7	M	222	233	Right-handed alpha
Helix 107	AL8	M	251	255	Right-handed 310
Helix 108	AL9	M	257	261	Right-handed 310
Helix 109	AM1	M	273	285	Right-handed alpha
Helix 110	AM2	M	289	296	Right-handed alpha
Helix 111	AM3	M	308	321	Right-handed alpha
Helix 112	AM4	M	337	349	Right-handed alpha
Helix 113	AM5	M	350	356	Right-handed 310
Helix 114	AM6	M	359	366	Right-handed alpha
Helix 115	AM7	M	369	374	Right-handed alpha

There are 30 sheets in PDB entry 6D8C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	32	first strand
Strand 2	H	16	21	anti-parallel
Strand 3	H	8	10	anti-parallel
Strand 4	H	103	107	parallel
Strand 5	H	131	136	parallel
Strand 6	H	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	54	first strand
Strand 2	H	35	38	anti-parallel
Strand 3	H	65	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	71	72	first strand
Strand 2	H	75	76	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	150	152	first strand
Strand 2	H	163	166	anti-parallel
Strand 3	H	169	170	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	238	240	first strand
Strand 2	H	248	250	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	297	298	first strand
Strand 2	H	329	330	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	29	32	first strand
Strand 2	J	16	21	anti-parallel
Strand 3	J	8	10	anti-parallel
Strand 4	J	103	107	parallel
Strand 5	J	131	136	parallel
Strand 6	J	357	358	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	53	54	first strand
Strand 2	J	35	38	anti-parallel
Strand 3	J	65	68	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	71	72	first strand
Strand 2	J	75	76	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	150	152	first strand
Strand 2	J	163	166	anti-parallel
Strand 3	J	169	170	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	238	240	first strand
Strand 2	J	248	250	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	297	298	first strand
Strand 2	J	329	330	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	29	32	first strand
Strand 2	K	16	21	anti-parallel
Strand 3	K	8	10	anti-parallel
Strand 4	K	103	107	parallel
Strand 5	K	131	136	parallel
Strand 6	K	357	358	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	53	54	first strand
Strand 2	K	35	38	anti-parallel
Strand 3	K	65	68	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	71	72	first strand
Strand 2	K	75	76	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	150	152	first strand
Strand 2	K	163	166	anti-parallel
Strand 3	K	169	170	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	238	240	first strand
Strand 2	K	248	250	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	297	298	first strand
Strand 2	K	329	330	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	32	first strand
Strand 2	L	16	21	anti-parallel
Strand 3	L	8	10	anti-parallel
Strand 4	L	103	107	parallel
Strand 5	L	131	136	parallel
Strand 6	L	357	358	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	35	38	anti-parallel
Strand 3	L	65	68	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	71	72	first strand
Strand 2	L	75	76	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	150	152	first strand
Strand 2	L	163	166	anti-parallel
Strand 3	L	169	170	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	238	240	first strand
Strand 2	L	248	250	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	297	298	first strand
Strand 2	L	329	330	parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	29	32	first strand
Strand 2	M	16	21	anti-parallel
Strand 3	M	8	10	anti-parallel
Strand 4	M	103	107	parallel
Strand 5	M	131	136	parallel
Strand 6	M	357	358	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	53	54	first strand
Strand 2	M	35	38	anti-parallel
Strand 3	M	65	68	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	71	72	first strand
Strand 2	M	75	76	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	150	152	first strand
Strand 2	M	163	166	anti-parallel
Strand 3	M	169	170	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	238	240	first strand
Strand 2	M	248	250	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	297	298	first strand
Strand 2	M	329	330	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D8C

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D8C