Analysis of interatomic Contacts of Structural Units in PDB entry:
6D8G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D8G entry

There are 2 chains in PDB entry 6D8G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 32	TYR 886
B	GLN 32	TYR 886

There are 28 helices in PDB entry 6D8G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	95	99	Right-handed 310
Helix 2	AA2	A	138	141	Right-handed 310
Helix 3	AA3	A	343	354	Right-handed alpha
Helix 4	AA4	A	367	378	Right-handed alpha
Helix 5	AA5	A	396	413	Right-handed alpha
Helix 6	AA6	A	428	435	Right-handed alpha
Helix 7	AA7	A	437	463	Right-handed alpha
Helix 8	AA8	A	476	481	Right-handed alpha
Helix 9	AA9	A	482	486	Right-handed 310
Helix 10	AB1	A	503	517	Right-handed alpha
Helix 11	AB2	A	546	564	Right-handed alpha
Helix 12	AB3	A	605	614	Right-handed alpha
Helix 13	AB4	A	770	775	Right-handed alpha
Helix 14	AB5	A	840	845	Right-handed alpha
Helix 15	AB6	B	95	99	Right-handed 310
Helix 16	AB7	B	343	354	Right-handed alpha
Helix 17	AB8	B	367	377	Right-handed alpha
Helix 18	AB9	B	396	412	Right-handed alpha
Helix 19	AC1	B	428	435	Right-handed alpha
Helix 20	AC2	B	437	463	Right-handed alpha
Helix 21	AC3	B	476	481	Right-handed alpha
Helix 22	AC4	B	482	486	Right-handed 310
Helix 23	AC5	B	504	517	Right-handed alpha
Helix 24	AC6	B	546	564	Right-handed alpha
Helix 25	AC7	B	605	614	Right-handed alpha
Helix 26	AC8	B	624	627	Right-handed 310
Helix 27	AC9	B	770	775	Right-handed alpha
Helix 28	AD1	B	840	845	Right-handed alpha

There are 29 sheets in PDB entry 6D8G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	136	first strand
Strand 2	A	102	107	anti-parallel
Strand 3	A	177	182	anti-parallel
Strand 4	A	34	37	anti-parallel
Strand 5	B	851	859	anti-parallel
Strand 6	B	791	799	anti-parallel
Strand 7	B	879	886	anti-parallel
Strand 8	B	720	724	anti-parallel
Strand 9	B	739	742	parallel
Strand 10	B	729	732	anti-parallel
Strand 11	B	535	537	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	65	first strand
Strand 2	A	42	45	anti-parallel
Strand 3	A	85	92	anti-parallel
Strand 4	A	147	154	anti-parallel
Strand 5	A	113	118	anti-parallel
Strand 6	A	121	127	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	187	first strand
Strand 2	A	212	219	anti-parallel
Strand 3	A	197	200	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	187	first strand
Strand 2	A	212	219	anti-parallel
Strand 3	A	255	261	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	209	first strand
Strand 2	A	265	266	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	250	first strand
Strand 2	A	225	234	anti-parallel
Strand 3	A	279	287	anti-parallel
Strand 4	A	293	301	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	272	first strand
Strand 2	A	275	276	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	309	first strand
Strand 2	A	313	316	anti-parallel
Strand 3	A	319	321	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	328	first strand
Strand 2	A	358	361	parallel
Strand 3	A	380	388	parallel
Strand 4	A	418	425	parallel
Strand 5	A	467	473	parallel
Strand 6	A	489	493	parallel
Strand 7	A	522	526	parallel
Strand 8	A	567	574	parallel
Strand 9	A	323	328	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	336	first strand
Strand 2	A	339	340	anti-parallel

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There are 11 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	537	first strand
Strand 2	A	729	732	anti-parallel
Strand 3	A	739	742	anti-parallel
Strand 4	A	721	724	parallel
Strand 5	A	879	886	anti-parallel
Strand 6	A	791	799	anti-parallel
Strand 7	A	851	859	anti-parallel
Strand 8	B	34	37	anti-parallel
Strand 9	B	177	182	anti-parallel
Strand 10	B	102	107	anti-parallel
Strand 11	B	133	136	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	623	first strand
Strand 2	A	640	648	anti-parallel
Strand 3	A	671	678	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	629	634	first strand
Strand 2	A	703	708	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	660	666	first strand
Strand 2	A	652	657	anti-parallel
Strand 3	A	684	689	anti-parallel
Strand 4	A	696	701	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	751	760	first strand
Strand 2	A	776	786	anti-parallel
Strand 3	A	864	872	anti-parallel
Strand 4	A	825	830	anti-parallel
Strand 5	A	833	839	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	751	760	first strand
Strand 2	A	776	786	anti-parallel
Strand 3	A	876	877	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	65	first strand
Strand 2	B	42	46	anti-parallel
Strand 3	B	85	92	anti-parallel
Strand 4	B	147	154	anti-parallel
Strand 5	B	113	118	anti-parallel
Strand 6	B	121	127	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	70	first strand
Strand 2	B	172	173	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	187	first strand
Strand 2	B	208	219	anti-parallel
Strand 3	B	255	261	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	203	first strand
Strand 2	B	208	219	anti-parallel
Strand 3	B	265	266	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	249	first strand
Strand 2	B	226	234	anti-parallel
Strand 3	B	279	287	anti-parallel
Strand 4	B	293	301	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	309	first strand
Strand 2	B	313	316	anti-parallel
Strand 3	B	319	320	anti-parallel

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There are 9 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	328	first strand
Strand 2	B	358	361	parallel
Strand 3	B	380	388	parallel
Strand 4	B	418	425	parallel
Strand 5	B	467	473	parallel
Strand 6	B	489	493	parallel
Strand 7	B	522	526	parallel
Strand 8	B	567	572	parallel
Strand 9	B	323	328	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	336	first strand
Strand 2	B	339	340	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	620	622	first strand
Strand 2	B	640	648	anti-parallel
Strand 3	B	671	678	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	629	634	first strand
Strand 2	B	703	708	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	660	666	first strand
Strand 2	B	652	657	anti-parallel
Strand 3	B	684	691	anti-parallel
Strand 4	B	694	701	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	751	760	first strand
Strand 2	B	776	786	anti-parallel
Strand 3	B	864	872	anti-parallel
Strand 4	B	825	830	anti-parallel
Strand 5	B	833	839	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	751	760	first strand
Strand 2	B	776	786	anti-parallel
Strand 3	B	876	877	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D8G

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D8G