Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 6D8J entry
There is 1 chain in PDB entry 6D8J
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
ARG 15 | GLU 93 |
Back to top of page
There are 6
helices in PDB entry 6D8J. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
AA1 | A
| 19 |
36 | Right-handed alpha |
Helix 2 |
AA2 | A
| 38 |
42 | Right-handed 310 |
Helix 3 |
AA3 | A
| 47 |
51 | Right-handed 310 |
Helix 4 |
AA4 | A
| 54 |
70 | Right-handed alpha |
Helix 5 |
AA5 | A
| 74 |
81 | Right-handed alpha |
Helix 6 |
AA6 | A
| 83 |
93 | Right-handed alpha |
Back to top of page
There are no sheets in PDB entry
6D8J
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il