Analysis of interatomic Contacts of Structural Units in PDB entry:
6D8K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D8K entry

There are 4 chains in PDB entry 6D8K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 25	LYS 594
B	GLN 25	PHE 595
C	ASN 26	LYS 594
D	ASN 26	TYR 590

There are 51 helices in PDB entry 6D8K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	33	Right-handed 310
Helix 2	AA2	A	56	60	Right-handed 310
Helix 3	AA3	A	90	94	Right-handed 310
Helix 4	AA4	A	236	239	Right-handed 310
Helix 5	AA5	A	326	341	Right-handed alpha
Helix 6	AA6	A	353	364	Right-handed alpha
Helix 7	AA7	A	381	399	Right-handed alpha
Helix 8	AA8	A	417	433	Right-handed alpha
Helix 9	AA9	A	461	466	Right-handed 310
Helix 10	AB1	A	484	488	Right-handed 310
Helix 11	AB2	A	517	521	Right-handed 310
Helix 12	AB3	A	522	539	Right-handed alpha
Helix 13	AB4	A	581	593	Right-handed alpha
Helix 14	AB5	B	29	33	Right-handed 310
Helix 15	AB6	B	52	60	Right-handed 310
Helix 16	AB7	B	90	94	Right-handed 310
Helix 17	AB8	B	236	239	Right-handed 310
Helix 18	AB9	B	318	321	Right-handed 310
Helix 19	AC1	B	326	341	Right-handed alpha
Helix 20	AC2	B	353	364	Right-handed alpha
Helix 21	AC3	B	381	399	Right-handed alpha
Helix 22	AC4	B	417	435	Right-handed alpha
Helix 23	AC5	B	460	466	Right-handed 310
Helix 24	AC6	B	484	488	Right-handed 310
Helix 25	AC7	B	517	521	Right-handed 310
Helix 26	AC8	B	522	538	Right-handed alpha
Helix 27	AC9	B	581	593	Right-handed alpha
Helix 28	AD1	C	29	33	Right-handed 310
Helix 29	AD2	C	56	60	Right-handed 310
Helix 30	AD3	C	90	94	Right-handed 310
Helix 31	AD4	C	318	321	Right-handed 310
Helix 32	AD5	C	326	341	Right-handed alpha
Helix 33	AD6	C	353	364	Right-handed alpha
Helix 34	AD7	C	381	399	Right-handed alpha
Helix 35	AD8	C	417	433	Right-handed alpha
Helix 36	AD9	C	460	466	Right-handed 310
Helix 37	AE1	C	484	488	Right-handed 310
Helix 38	AE2	C	517	521	Right-handed 310
Helix 39	AE3	C	522	538	Right-handed alpha
Helix 40	AE4	C	581	593	Right-handed alpha
Helix 41	AE5	D	29	33	Right-handed 310
Helix 42	AE6	D	56	60	Right-handed 310
Helix 43	AE7	D	90	94	Right-handed 310
Helix 44	AE8	D	318	321	Right-handed 310
Helix 45	AE9	D	326	338	Right-handed alpha
Helix 46	AF1	D	353	363	Right-handed alpha
Helix 47	AF2	D	381	399	Right-handed alpha
Helix 48	AF3	D	429	435	Right-handed alpha
Helix 49	AF4	D	517	521	Right-handed 310
Helix 50	AF5	D	522	532	Right-handed alpha
Helix 51	AF6	D	581	589	Right-handed alpha

There are 35 sheets in PDB entry 6D8K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	37	first strand
Strand 2	A	191	196	anti-parallel
Strand 3	A	115	120	anti-parallel
Strand 4	A	146	149	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	82	first strand
Strand 2	A	40	47	anti-parallel
Strand 3	A	99	108	anti-parallel
Strand 4	A	157	166	anti-parallel
Strand 5	A	126	131	anti-parallel
Strand 6	A	134	140	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	208	first strand
Strand 2	A	215	222	anti-parallel
Strand 3	A	251	257	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	245	first strand
Strand 2	A	230	235	anti-parallel
Strand 3	A	272	277	anti-parallel
Strand 4	A	282	287	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	295	first strand
Strand 2	A	298	301	anti-parallel
Strand 3	A	304	305	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	312	first strand
Strand 2	A	344	346	parallel
Strand 3	A	366	370	parallel
Strand 4	A	405	409	parallel
Strand 5	A	439	444	parallel
Strand 6	A	468	472	parallel
Strand 7	A	498	502	parallel
Strand 8	A	543	546	parallel
Strand 9	A	308	312	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	317	first strand
Strand 2	A	322	323	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	450	first strand
Strand 2	A	455	458	anti-parallel
Strand 3	A	490	491	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	554	555	first strand
Strand 2	A	568	569	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	37	first strand
Strand 2	B	191	197	anti-parallel
Strand 3	B	114	120	anti-parallel
Strand 4	B	146	149	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	82	first strand
Strand 2	B	40	47	anti-parallel
Strand 3	B	99	106	anti-parallel
Strand 4	B	159	166	anti-parallel
Strand 5	B	126	131	anti-parallel
Strand 6	B	134	140	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	B	186	187	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	215	221	anti-parallel
Strand 3	B	252	257	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	245	first strand
Strand 2	B	230	235	anti-parallel
Strand 3	B	271	277	anti-parallel
Strand 4	B	282	288	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	294	first strand
Strand 2	B	299	301	anti-parallel
Strand 3	B	304	305	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	312	first strand
Strand 2	B	344	346	parallel
Strand 3	B	366	370	parallel
Strand 4	B	405	409	parallel
Strand 5	B	439	444	parallel
Strand 6	B	468	472	parallel
Strand 7	B	498	502	parallel
Strand 8	B	543	546	parallel
Strand 9	B	308	312	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	317	first strand
Strand 2	B	322	323	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	450	first strand
Strand 2	B	455	458	anti-parallel
Strand 3	B	490	492	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	554	555	first strand
Strand 2	B	568	569	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	37	first strand
Strand 2	C	191	196	anti-parallel
Strand 3	C	115	120	anti-parallel
Strand 4	C	146	149	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	82	first strand
Strand 2	C	40	47	anti-parallel
Strand 3	C	99	108	anti-parallel
Strand 4	C	157	166	anti-parallel
Strand 5	C	126	131	anti-parallel
Strand 6	C	134	140	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	124	first strand
Strand 2	C	186	187	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	208	first strand
Strand 2	C	215	222	anti-parallel
Strand 3	C	251	257	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	245	first strand
Strand 2	C	230	235	anti-parallel
Strand 3	C	272	277	anti-parallel
Strand 4	C	282	287	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	292	294	first strand
Strand 2	C	299	301	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	543	546	parallel
Strand 3	C	498	502	parallel
Strand 4	C	469	472	parallel
Strand 5	C	443	444	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	317	first strand
Strand 2	C	322	323	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	346	first strand
Strand 2	C	366	370	parallel
Strand 3	C	405	409	parallel
Strand 4	C	439	441	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	448	450	first strand
Strand 2	C	455	457	anti-parallel
Strand 3	C	489	490	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	554	555	first strand
Strand 2	C	568	569	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	37	first strand
Strand 2	D	191	197	anti-parallel
Strand 3	D	114	120	anti-parallel
Strand 4	D	146	149	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	82	first strand
Strand 2	D	40	47	anti-parallel
Strand 3	D	99	108	anti-parallel
Strand 4	D	157	166	anti-parallel
Strand 5	D	126	131	anti-parallel
Strand 6	D	134	140	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	317	first strand
Strand 2	D	322	323	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	346	first strand
Strand 2	D	366	370	parallel
Strand 3	D	405	411	parallel
Strand 4	D	440	442	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	554	555	first strand
Strand 2	D	568	569	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D8K

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D8K