Analysis of interatomic Contacts of Structural Units in PDB entry:
6D8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D8V entry

There is 1 chain in PDB entry 6D8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 38ARG 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6D8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 83Right-handed alpha
Helix 2
AA2
A
87 96Right-handed alpha
Helix 3
AA3
A
96 102Right-handed alpha
Helix 4
AA4
A
125 129Right-handed 310
Helix 5
AA5
A
159 169Right-handed alpha
Helix 6
AA6
A
211 221Right-handed alpha
Helix 7
AA7
A
243 247Right-handed 310
Helix 8
AA8
A
255 266Right-handed alpha
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There are 3 sheets in PDB entry 6D8V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 152first strand
Strand 2
A
138 142anti-parallel
Strand 3
A
107 112anti-parallel
Strand 4
A
200 210anti-parallel
Strand 5
A
186 197anti-parallel
Strand 6
A
172 173anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 152first strand
Strand 2
A
138 142anti-parallel
Strand 3
A
107 112anti-parallel
Strand 4
A
200 210anti-parallel
Strand 5
A
186 197anti-parallel
Strand 6
A
177 179anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
228 232anti-parallel
Strand 3
A
296 305anti-parallel
Strand 4
A
280 291anti-parallel
Strand 5
A
269 276anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il